YRC Public Data Repository - Protein Structure Prediction

Protein:	T2R16_MOUSE
Organism:	Mus musculus
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for T2R16_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|51989041 - gi\|51989041\|gb\|AAU21083.1\| taste receptor T2R7 [Pan paniscus]	298.0	[0..2]	[294..1]
gi\|55667083 - gi\|55667083\|ref\|XP_520745.1\| PREDICTED: similar to taste receptor T2R7 [Pan troglodytes]	298.0	[0..2]	[294..1]
TAS2R7 - taste receptor, type 2, member 7	297.0	[0..2]	[294..1]
TA2R7_RAT - Taste receptor type 2 member 7 OS=Rattus norvegicus GN=Tas2r7 PE=1 SV=2	296.0	[0..2]	[293..1]
TA2R7_MACMU - Taste receptor type 2 member 7 OS=Macaca mulatta GN=TAS2R7 PE=3 SV=1	296.0	[0..2]	[294..1]
TA2R7_PAPHA - Taste receptor type 2 member 7 OS=Papio hamadryas GN=TAS2R7 PE=3 SV=1	296.0	[0..2]	[294..1]
gi\|51989126 - gi\|51989126\|gb\|AAU21117.1\| taste receptor T2R7 [Gorilla gorilla] TA2R7_GORGO - Taste receptor type 2 member 7 OS=Gorilla gorilla gorilla GN=TAS2R7 PE=3 SV=1	293.0	[0..2]	[294..1]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPTQVTIFS IIMYVLESLV IIVQSCTTVA VLFREWMHFQ RLSPVETILI SLGISHFCLQ  60
   61 WTSMLYNFGT YSRPVLLFWK VSVVWEFMNI LTFWLTSWLA VLYCVKVSSF THPIFLWLRM 120
  121 KILKLVLWLI LGALIASCLS IIPSVVKYHI QMELVTLDNL PKNNSLILRL QQFEWYFSNP 180
  181 LKMIGFGIPF FVFLASIILL TVSLVQHWVQ MKHYSSSNSS LKAQFTVLKS LATFFTFFTS 240
  241 YFLTIVISFI GTVFDKKSWF WVCEAVIYGL VCIHFTSLMM SNPALKKALK LQFWSPEPS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.14
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits