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View Structure Prediction Details

Protein: PTN_MOUSE
Organism: Mus musculus
Length: 168 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTN_MOUSE.

Description E-value Query
Range
Subject
Range
gi|74183474 - gi|74183474|dbj|BAE36603.1| unnamed protein product [Mus musculus]
223.0 [0..1] [153..1]
gi|50415451 - gi|50415451|gb|AAH77546.1| Unknown (protein for MGC:83455) [Xenopus laevis]
210.0 [0..8] [147..3]
PTN_PIG - Pleiotrophin OS=Sus scrofa GN=PTN PE=2 SV=1
208.0 [0..1] [168..1]
gi|73978886 - gi|73978886|ref|XP_532732.2| PREDICTED: similar to Pleiotrophin precursor (PTN) (Heparin-binding gro...
205.0 [0..1] [168..1]
PTN_BOVIN - Pleiotrophin OS=Bos taurus GN=PTN PE=1 SV=2
204.0 [0..1] [168..1]
gi|61368077 - gi|61368077|gb|AAX43098.1| pleiotrophin [synthetic construct]
204.0 [0..1] [168..1]
gi|50728948 - gi|50728948|ref|XP_416358.1| PREDICTED: hypothetical protein [Gallus gallus]
197.0 [0..13] [145..11]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQQYQQQR RKFAAAFLAL IFILAAVDTA EAGKKEKPEK KVKKSDCGEW QWSVCVPTSG  60
   61 DCGLGTREGT RTGAECKQTM KTQRCKIPCN WKKQFG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.0
Match: 1mknA
Description: Midkine, a heparin-binding growth factor, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [97-168]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AECKYQFQAW GECDLNTALK TRTGSLKRAL HNADCQKTVT ISKPCGKLTK PKPQAESKKK  60
   61 KKEGKKQEKM LD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 32.677781
Match: PF01091.9
Description: No description for PF01091.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle