YRC Public Data Repository - Protein Structure Prediction

Protein:	ABEC2_MOUSE
Organism:	Mus musculus
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ABEC2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|195540026, gi... - gi\|27681627\|ref\|XP_217334.1\| PREDICTED: similar to Probable C->U editing enzyme APOBEC-2 [Rattus nor...	323.0	[0..1]	[224..1]
ABEC2_BOVIN - Probable C->U-editing enzyme APOBEC-2 OS=Bos taurus GN=APOBEC2 PE=2 SV=1	309.0	[0..1]	[224..1]
gi\|62898654 - gi\|62898654\|dbj\|BAD97181.1\| apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2 varia...	305.0	[0..1]	[224..1]
gi\|109071063 - gi\|109071063\|ref\|XP_001117195.1\| PREDICTED: apolipoprotein B mRNA editing enzyme, catalytic polypept...	304.0	[0..1]	[224..1]
gi\|197098854 - gi\|197098854\|ref\|NP_001125408.1\| apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2 ... ABEC2_PONPY - Probable C->U-editing enzyme APOBEC-2 OS=Pongo pygmaeus GN=APOBEC2 PE=2 SV=1	300.0	[0..1]	[224..1]
gi\|114686443 - gi\|114686443\|ref\|XP_525658.2\| PREDICTED: apolipoprotein B mRNA editing enzyme, catalytic polypeptide...	290.0	[0..30]	[224..184]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQKEEAAEA AAPASQNGDD LENLEDPEKL KELIDLPPFE IVTGVRLPVN FFKFQFRNVE  60
   61 YSSGRNKTFL CYVVEVQSKG GQAQATQGYL EDEHAGAHAE EAFFNTILPA FDPALKYNVT 120
  121 WYVSSSPCAA CADRILKTLS KTKNLRLLIL VSRLFMWEEP EVQAALKKLK EAGCKLRIMK 180
  181 PQDFEYIWQN FVEQEEGESK AFEPWEDIQE NFLYYEEKLA DILK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.39794
Match:	2nytA
Description:	No description for 2nytA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits