YRC Public Data Repository - Protein Structure Prediction

Protein:	NNRE_MOUSE
Organism:	Mus musculus
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NNRE_MOUSE.

Description	E-value	Query Range	Subject Range
NNRE_RAT - NAD(P)H-hydrate epimerase OS=Rattus norvegicus GN=Apoa1bp PE=2 SV=1	349.0	[0..14]	[282..14]
gi\|109017366 - gi\|109017366\|ref\|XP_001116635.1\| PREDICTED: similar to apolipoprotein A-I binding protein isoform 1 ...	342.0	[0..1]	[282..1]
gi\|71682679, gi\|... - gi\|72533474\|gb\|AAI00935.1\| Apolipoprotein A-I binding protein [Homo sapiens], gi\|71682683\|gb\|AAI0093...	340.0	[0..17]	[282..17]
gi\|55588372 - gi\|55588372\|ref\|XP_513889.1\| PREDICTED: similar to Apolipoprotein A-I binding protein isoform 3 [Pan...	339.0	[0..17]	[282..17]
NNRE_PIG - NAD(P)H-hydrate epimerase OS=Sus scrofa GN=APOA1BP PE=2 SV=1	336.0	[0..14]	[282..14]
NNRE_BOVIN - NAD(P)H-hydrate epimerase OS=Bos taurus GN=APOA1BP PE=2 SV=1	328.0	[0..17]	[282..17]
gi\|73961555 - gi\|73961555\|ref\|XP_854934.1\| PREDICTED: similar to apolipoprotein A-I binding protein [Canis familia...	306.0	[0..17]	[282..72]
PPOX1_ARATH - Pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic OS=Arabidopsis thaliana GN=PPOX1 PE=1 ...	297.0	[0..17]	[281..39]
gi\|77748479 - gi\|77748479\|gb\|AAI06227.1\| LOC496142 protein [Xenopus laevis]	296.0	[0..3]	[281..1]

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Predicted Domain #1

Region A:
Residues: [1-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGLRTLLGL GLLVAGSRLP RVISQQSVCR ARPIWWGTQR RGSETMAGAA VKYLSQEEAQ  60
   61 AVDQELFNEY QFSVDQLMEL AGLSCATAIA KAYPPTSMSK SPPTVLVICG PGNNGGDGLV 120
  121 CARHLKLFGY QPTIYYPKRP NKPLFTGLVT QCQKMDIPFL GEMPPEPMMV DELYELVVDA 180
  181 IFGFSFKGDV REPFHSILSV LSGLTVPIAS IDIPSGWDVE KGNPSGIQPD LLISLTAPKK 240
  241 SATHFTGRYH YLGGRFVPPA LEKKYQLNLP SYPDTECVYR LQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	91.39794
Match:	2dg2A
Description:	No description for 2dg2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits