YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP4B_MOUSE
Organism:	Mus musculus
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP4B_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|12845146 - gi\|12845146\|dbj\|BAB26635.1\| unnamed protein product [Mus musculus]	463.0	[0..1]	[294..1]
gi\|243367 - gi\|243367\|gb\|AAB21120.1\| H,K-ATPase beta-subunit [Rattus sp.] ATP4B_RAT - Potassium-transporting ATPase subunit beta OS=Rattus norvegicus GN=Atp4b PE=2 SV=3	463.0	[0..1]	[294..1]
ATP4B_RABIT - Potassium-transporting ATPase subunit beta OS=Oryctolagus cuniculus GN=ATP4B PE=2 SV=1	449.0	[0..1]	[294..1]
ATP4B - ATPase, H+/K+ exchanging, beta polypeptide gi\|123979828, gi... - gi\|123994595\|gb\|ABM84899.1\| ATPase, H+/K+ exchanging, beta polypeptide [synthetic construct], gi\|123...	446.0	[0..1]	[294..1]
gi\|114650768 - gi\|114650768\|ref\|XP_001146058.1\| PREDICTED: ATPase, H+/K+ exchanging, beta polypeptide [Pan troglody...	444.0	[0..1]	[294..1]
ATP4B_CANLF - Potassium-transporting ATPase subunit beta OS=Canis lupus familiaris GN=ATP4B PE=2 SV=1	443.0	[0..1]	[294..1]
gi\|109121354 - gi\|109121354\|ref\|XP_001088163.1\| PREDICTED: ATPase, H+/K+ exchanging, beta polypeptide [Macaca mulat...	443.0	[0..1]	[294..1]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALQEKKSC SQRMAEFRHY CWNPDTGQML GRTPARWVWI SLYYAGFYVV MTGLFALCIY  60
   61 VLMQTI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [67-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPYTPDYQDQ LKSPGVTLRP DVYGERGLKI SYNVSENSSW AGLTHTLHSF LAGYTPASQQ  60
   61 DSINCTSEKY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [137-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FFQESFAAPN HTKFSCKFTA DMLQNCSGLA DPSFGFEEGK PCFIIKMNRI VKFLPSNNTA  60
   61 PRVDCTFQDD PQKPRKDTEP LQVEYYPPNG TFSLHYFPYY GKKAQPHYSN PLVAAKLLNV 120
  121 PKNMQVSIVC KILADHVTFN NPHDPYEGKV EFKLTIQK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits