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View Structure Prediction Details

Protein: NPB_MOUSE
Organism: Mus musculus
Length: 119 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NPB_MOUSE.

Description E-value Query
Range
Subject
Range
NPB_RAT - Neuropeptide B OS=Rattus norvegicus GN=Npb PE=2 SV=1
185.0 [0..1] [118..1]
NPB_BOVIN - Neuropeptide B OS=Bos taurus GN=NPB PE=1 SV=1
168.0 [0..17] [117..20]
NPB - neuropeptide B
153.0 [0..1] [116..1]
gi|109119139 - gi|109119139|ref|XP_001112472.1| PREDICTED: similar to preproneuropeptide B [Macaca mulatta]
150.0 [0..17] [118..20]
gi|47223854 - gi|47223854|emb|CAG06031.1| unnamed protein product [Tetraodon nigroviridis]
130.0 [0..1] [118..1]
gi|188219655, gi... - gi|68441949|ref|XP_692220.1| PREDICTED: hypothetical protein [Danio rerio], gi|188219655|ref|NP_0011...
117.0 [0..2] [116..5]
gi|73964738 - gi|73964738|ref|XP_849890.1| PREDICTED: similar to preproneuropeptide B [Canis familiaris]
74.0 [0..67] [118..6]
gi|94403560 - gi|94403560|ref|XP_992664.1| PREDICTED: similar to prepro-Neuropeptide W polypeptide [Mus musculus]
47.0 [0..19] [68..71]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARCRTLVAA ALALLLPPAL AWYKPAAGPH HYSVGRASGL LSSFHRFPST RRSESPALRV  60
   61 GTGPLRNLEM RPSVRSLALC VKDVTPNLQS CQRQLNSRGT FQCKADVFLS LHETDCQST

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.797 a.24.7 FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
View Download 0.672 a.64.1 Saposin
View Download 0.612 d.26.1 FKBP-like
View Download 0.575 a.24.17 Group V grass pollen allergen
View Download 0.529 a.77.1 DEATH domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle