YRC Public Data Repository - Protein Structure Prediction

Protein:	LY6I_MOUSE
Organism:	Mus musculus
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LY6I_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|8809770, gi\|2... - gi\|8809770\|gb\|AAF79939.1\|AF232024_1 Ly-6I.1 [Mus musculus], gi\|219521626\|gb\|AAI45088.1\| Ly6i protein...	161.0	[0..1]	[134..1]
gi\|109480891, gi... - gi\|166157532\|ref\|NP_001107264.1\| hypothetical protein LOC503162 [Rattus norvegicus], gi\|165970680\|gb...	148.0	[0..1]	[134..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTSHAIKSC VLILLVTLLC AERAQGLECY QCYGVPFETS CPSFTCPYPD GFCVAQEEEF  60
   61 IANSQRKKVK SRSCHPFCPD EIEKKFILDP NTKMNISCCQ EDLCNAAVPT GGSSWTTAGV 120
  121 LLFSLGSVLL QTLM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.522879
Match:	2ofsA
Description:	No description for 2ofsA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits