YRC Public Data Repository - Protein Structure Prediction

Protein:	GON1_MOUSE
Organism:	Mus musculus
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GON1_MOUSE.

Description	E-value	Query Range	Subject Range
GON1_HAPBU - Progonadoliberin-1 OS=Haplochromis burtoni GN=gnrh1 PE=1 SV=2	129.0	[0..1]	[88..1]
gi\|28849243, gi\|... - gi\|28849243\|dbj\|BAC65154.1\| seabream-type gonadotropin-releasing hormone precursor [Oreochromis nilo...	129.0	[0..1]	[88..1]
GON1_TUPBE - Progonadoliberin-1 OS=Tupaia belangeri GN=GNRH1 PE=3 SV=1	126.0	[0..1]	[90..3]
gi\|50659042 - gi\|50659042\|gb\|AAT80334.1\| seabream-type gonadotropin-releasing hormone precursor [Rachycentron cana...	125.0	[0..1]	[88..1]
gi\|224191, gi\|34... - gi\|34357\|emb\|CAA25526.1\| unnamed protein product [Homo sapiens], gi\|224191\|prf\|\|1011296A luliberin p...	124.0	[0..2]	[90..4]
gi\|63391988 - gi\|63391988\|gb\|AAU94309.2\| prepro pejerrey-type gonadotropin-releasing hormone [Odontesthes bonarien...	123.0	[0..1]	[88..1]
GON1_PAGMA - Progonadoliberin-1 OS=Pagrus major GN=gnrh1 PE=3 SV=1	122.0	[0..1]	[88..1]
gi\|61368711, gi\|... - gi\|61368711\|gb\|AAX43225.1\| gonadotropin-releasing hormone 1 [synthetic construct], gi\|60829470\|gb\|AA...	121.0	[0..2]	[90..4]
gi\|109733046, gi... - gi\|109733857\|gb\|AAI16898.1\| Gnrh1 protein [Mus musculus], gi\|109733046\|gb\|AAI16900.1\| Gnrh1 protein ...	121.0	[0..1]	[90..7]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILKLMAGIL LLTVCLEGCS SQHWSYGLRP GGKRNTEHLV ESFQEMGKEV DQMAEPQHFE  60
   61 CTVHWPRSPL RDLRGALESL IEEEARQKKM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits