YRC Public Data Repository - Protein Structure Prediction

Protein:	LZIC_MOUSE
Organism:	Mus musculus
Length:	190 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LZIC_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|74268135 - gi\|74268135\|gb\|AAI03025.1\| LZIC protein [Bos taurus]	271.0	[0..4]	[190..1]
LZIC_RAT - Protein LZIC OS=Rattus norvegicus GN=Lzic PE=2 SV=1	271.0	[0..1]	[190..1]
gi\|57113193 - gi\|57113193\|ref\|XP_548561.1\| PREDICTED: similar to leucine zipper and CTNNBIP1 domain containing [Ca...	269.0	[0..1]	[190..1]
gi\|114553860 - gi\|114553860\|ref\|XP_001161117.1\| PREDICTED: leucine zipper and CTNNBIP1 domain containing isoform 2 ...	269.0	[0..1]	[172..1]
LZIC - leucine zipper and CTNNBIP1 domain containing gi\|114553868, gi... - gi\|114553868\|ref\|XP_001161245.1\| PREDICTED: leucine zipper and CTNNBIP1 domain containing isoform 5 ...	268.0	[0..1]	[190..1]
LZIC_CHICK - Protein LZIC OS=Gallus gallus GN=LZIC PE=2 SV=1	256.0	[0..1]	[190..1]
LZIC_XENTR - Protein LZIC OS=Xenopus tropicalis GN=lzic PE=2 SV=1	249.0	[0..1]	[190..1]
gi\|108996632, gi... - gi\|108996635\|ref\|XP_001100273.1\| PREDICTED: similar to leucine zipper and CTNNBIP1 domain containing...	231.0	[0..1]	[190..1]
gi\|47228808 - gi\|47228808\|emb\|CAG07540.1\| unnamed protein product [Tetraodon nigroviridis]	222.0	[0..1]	[186..1]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRGKTETS KLKQNLEEQL DRLMQQLQDL EECREELDAD EYEETKKETL EQLSEFNDSL  60
   61 KKIMSGNMTL VDELSGMQLA IQAAISQAFK TPEVIRLFAK KQPGQLRTRL AEM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.957	0.072	beta-catenin binding	a.47.2	t-snare proteins

Predicted Domain #2

Region A:
Residues: [114-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRDLMVGKLE RELYTQRKVE ILTALRKLGE KLTEDDETFL SANASAVLSQ FEKVSTELGS  60
   61 GDKVLALAGF DVEKAKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.30103
Match:	1m1eB
Description:	beta-catenin-interacting protein ICAT
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits