YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12832315, gi\|...
Organism:	Mus musculus
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12832315, gi|....

Description	E-value	Query Range	Subject Range
MD2BP_MOUSE - MAD2L1-binding protein OS=Mus musculus GN=Mad2l1bp PE=1 SV=2	605.0	[0..1]	[276..1]
gi\|149069355, gi... - gi\|57528331\|ref\|NP_001009699.1\| MAD2L1 binding protein [Rattus norvegicus], gi\|56971334\|gb\|AAH88268....	585.0	[0..1]	[276..1]
gi\|168272910 - gi\|168272910\|dbj\|BAG10294.1\| MAD2L1-binding protein [synthetic construct] MAD2L1BP - MAD2L1 binding protein	522.0	[0..12]	[276..9]
gi\|114607564 - gi\|114607564\|ref\|XP_518498.2\| PREDICTED: MAD2L1 binding protein isoform 2 [Pan troglodytes]	521.0	[0..12]	[276..9]
gi\|109071293 - gi\|109071293\|ref\|XP_001096335.1\| PREDICTED: MAD2L1 binding protein [Macaca mulatta]	517.0	[0..12]	[276..9]

Back

Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASGEEDMS ELSPAAAPNL DWYEKPEETH APEVDLETVI PPAQEPSNPA DAFCPRDLVP  60
   61 VVFPGPVSQE DCCQFTCELL KHILYQRHQL PLPYEQLKHF YRKVPQAEDT ARKKAWLATE 120
  121 ARNRKCQQAL AELESVLSHL RDFFARTLVP QVLILLGGNA LSPKEFYELD LSRLAPFGVD 180
  181 QGLNTAACLR RLFRAIFLAD PFSELQTPPL MGTIVMVQGH RDCGEDWFQP KLNYRVPSRG 240
  241 HKLTVTLSCG RPSVPAMASE DYIWFQAPVT LKGFHE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits