YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: DFA14_MOUSE
Organism: Mus musculus
Length: 85 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DFA14_MOUSE.

Description E-value Query
Range
Subject
Range
DFA11_MOUSE - Alpha-defensin 11 (Fragment) OS=Mus musculus GN=Defa11 PE=2 SV=2
135.0 [0..1] [85..1]
gi|9247199 - gi|9247199|gb|AAB32271.2| cryptdin 17; Cryp17 [Mus sp.]
131.0 [0..4] [85..1]

Back

Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALVLLAFQVQ ADPIQNTDEE TKTEEQPGED DQAVSVSFGD PEGSSLQEES LRDLVCYCRT  60
   61 RGCKRRERMN GTCRKGHLMH TLCCR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.420 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.391 b.1.3 PKD domain
View Download 0.317 b.1.1 Immunoglobulin
View Download 0.292 b.11.1 gamma-Crystallin-like
View Download 0.292 d.349.1 Description not found.
View Download 0.264 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.214 a.60.6 DNA polymerase beta, N-terminal domain-like
View Download 0.214 b.1.1 Immunoglobulin


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle