YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123244561, gi...
Organism:	Mus musculus
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123244561, gi....

Description	E-value	Query Range	Subject Range
gi\|114556687 - gi\|114556687\|ref\|XP_513414.2\| PREDICTED: similar to Chromosome 1 open reading frame 123 [Pan troglod...	263.0	[0..15]	[196..54]
gi\|73956444 - gi\|73956444\|ref\|XP_536703.2\| PREDICTED: similar to CG4646-PA [Canis familiaris]	260.0	[0..33]	[196..51]
gi\|109004854 - gi\|109004854\|ref\|XP_001112673.1\| PREDICTED: similar to CG4646-PA isoform 3 [Macaca mulatta]	257.0	[0..37]	[196..1]
CA123_MOUSE - UPF0587 protein C1orf123 homolog OS=Mus musculus PE=1 SV=1	256.0	[0..37]	[196..1]
gi\|55587092 - gi\|55587092\|ref\|XP_513414.1\| PREDICTED: similar to hypothetical protein FLJ20580 [Pan troglodytes] C1orf123 - chromosome 1 open reading frame 123	256.0	[0..37]	[196..1]
CA123_BOVIN - UPF0587 protein C1orf123 homolog OS=Bos taurus PE=2 SV=1	253.0	[0..37]	[196..1]
CA123_RAT - UPF0587 protein C1orf123 homolog OS=Rattus norvegicus PE=2 SV=1	252.0	[0..37]	[196..1]
CA123_XENLA - UPF0587 protein C1orf123 homolog OS=Xenopus laevis PE=2 SV=1	242.0	[0..37]	[196..1]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGVRLGWRG LSREGRGGAW HAAERTRPCT QRVPPSSQKI ALQLKATLEN VTNLRPVGED  60
   61 FRWYLKMKCG NCGEISEKWQ YIRLMDSVAL KGGRGSASMV QKCKLCAREN SIDILSSTIK 120
  121 AYNAEDNEKF KTIVEFECRG LEPVDFQPQA GFAADGVESG TVFSDINLQE KDWTDYDEKA 180
  181 QESVGIFEVT HQFVKC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	1zsoA
Description:	Hypothetical protein from plasmodium falciparum
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits