YRC Public Data Repository - Protein Structure Prediction

Protein:	TR112_MOUSE
Organism:	Mus musculus
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TR112_MOUSE.

Description	E-value	Query Range	Subject Range
tr\|G3I886\|G3I886... - TRM112-like protein OS=Cricetulus griseus GN=I79_019749 PE=4 SV=1 gi\|27661288, gi\|... - gi\|27661288\|ref\|XP_215167.1\| PREDICTED: similar to UPF0315 protein [Rattus norvegicus], gi\|197246788...	203.0	[0..1]	[125..1]
gi\|12833869 - gi\|12833869\|dbj\|BAB22695.1\| unnamed protein product [Mus musculus]	199.0	[0..1]	[125..1]
gi\|57099691 - gi\|57099691\|ref\|XP_533242.1\| PREDICTED: similar to UPF0315 protein [Canis familiaris]	194.0	[0..1]	[125..1]
TR112_BOVIN - Multifunctional methyltransferase subunit TRM112-like protein OS=Bos taurus GN=TRMT112 PE=2 SV=1	193.0	[0..1]	[125..1]
gi\|109105577 - gi\|109105577\|ref\|XP_001114960.1\| PREDICTED: similar to UPF0315 protein AD-001 [Macaca mulatta]	189.0	[0..1]	[125..1]
gi\|123997575, gi... - gi\|123997575\|gb\|ABM86389.1\| hypothetical protein HSPC152 [synthetic construct], gi\|123982892\|gb\|ABM8... gi\|114638305, gi... - gi\|114638305\|ref\|XP_001164844.1\| PREDICTED: similar to adrenal gland protein AD-001 isoform 1 [Pan t... TRMT112 - tRNA methyltransferase 11-2 homolog (S. cerevisiae)	189.0	[0..1]	[125..1]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLTHNLLS SHVRGVGTRG FPLRLQATEV RINPVEFNPE FVARMIPKVE WAALVQAADT  60
   61 LNLAEVPKEP TEGYEHDETF LRKMHHVLLE VDVLEGTLQC PESGRLFPIS RGIPNMLLND 120
  121 EETET

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.045757
Match:	2j6aA
Description:	No description for 2j6aA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits