YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18859595, gi\|...
Organism:	Mus musculus
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18859595, gi|....

Description	E-value	Query Range	Subject Range
NUDT7_MOUSE - Peroxisomal coenzyme A diphosphatase NUDT7 OS=Mus musculus GN=Nudt7 PE=1 SV=2	224.0	[0..1]	[236..1]
gi\|109508825, gi... - gi\|109508825\|ref\|XP_001076428.1\| PREDICTED: similar to nudix (nucleoside diphosphate linked moiety X...	208.0	[0..1]	[236..1]
gi\|114663788 - gi\|114663788\|ref\|XP_511119.2\| PREDICTED: similar to Peroxisomal coenzyme A diphosphatase NUDT7 (Nucl...	184.0	[0..1]	[236..84]
gi\|109129292 - gi\|109129292\|ref\|XP_001105669.1\| PREDICTED: similar to Peroxisomal coenzyme A diphosphatase NUDT7 (N...	183.0	[0..1]	[236..186]
gi\|113426514, gi... - gi\|113426514\|ref\|XP_001127131.1\| PREDICTED: similar to Peroxisomal coenzyme A diphosphatase NUDT7 (N...	182.0	[0..9]	[236..92]
gi\|76639912 - gi\|76639912\|ref\|XP_581004.2\| PREDICTED: similar to Peroxisomal coenzyme A diphosphatase NUDT7 (Nucle...	178.0	[0..1]	[236..57]

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Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRPCGLPEP VRNNLIDDAK ARLRKSDVGT RYSHLSSNKF SVLVPLLARG GKLYLMFTVR  60
   61 SDKLKREPGE VCFPGGKRDP VDTDDTATAL REAQEEVGLH PHQVEVVSHL VPYVFDNDAL 120
  121 VTPVVGFLDH NFQAQPNADE VKEVFFVPLD YFLHPQVYYQ EQITQSGRDF IMHCFEYKDP 180
  181 ETGVNYLIQG MTSKLAVLVA LIILEQSPAF KIDFDLHDLI PSCERTFLWR YSLSKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	1nqyA
Description:	Coenzyme A pyrophosphatase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.49075808737475	bayes_pls_golite062009
hydrolase activity	1.08437985755037	bayes_pls_golite062009
binding	0.531719591582995	bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing C=C bonds	0.138509997442311	bayes_pls_golite062009
protein binding	0.137828767485193	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: