YRC Public Data Repository - Protein Structure Prediction

Protein:	COX7R_MOUSE
Organism:	Mus musculus
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX7R_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|74220257 - gi\|74220257\|dbj\|BAE31307.1\| unnamed protein product [Mus musculus]	209.0	[0..1]	[111..1]
gi\|27716471, gi\|... - ref\|XP_216635.1\| similar to Cox7a2l protein [Rattus norvegicus], gi\|187469733\|gb\|AAI66896.1\| Cox7a2l...	202.0	[0..1]	[111..1]
gi\|109102722, gi... - gi\|109149705\|ref\|XP_001085508.1\| PREDICTED: similar to cytochrome c oxidase subunit VIIa polypeptide...	201.0	[0..1]	[111..1]
gi\|60653439, gi\|... - gi\|60653439\|gb\|AAX29414.1\| cytochrome c oxidase subunit VIIa polypeptide 2 like [synthetic construct...	200.0	[0..1]	[111..1]
HGNC:2289\|MIM:60... - c oxidase subunit VIIa polypeptide 2 like gi\|124126821, gi... - gi\|60823834\|gb\|AAX36658.1\| cytochrome c oxidase subunit VIIa polypeptide 2-like [synthetic construct... COX7A2L - cytochrome c oxidase subunit VIIa polypeptide 2 like gi\|55595588 - gi\|55595588\|ref\|XP_515433.1\| PREDICTED: similar to cytochrome c oxidase polypeptide VIIa-heart precu...	199.0	[0..1]	[111..1]
gi\|57098271 - gi\|57098271\|ref\|XP_532946.1\| PREDICTED: similar to cytochrome c oxidase subunit VIIa polypeptide 2 l...	198.0	[0..1]	[111..1]
COX7R_BOVIN - Cytochrome c oxidase subunit 7A-related protein, mitochondrial OS=Bos taurus GN=COX7A2L PE=3 SV=1	196.0	[0..1]	[111..1]

Back

Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYKFSSFTQ KLAGAWASEA YTPQGLKPVS TEAPPIIFAT PTKLTSSVTA YDYSGKNKVP  60
   61 ELQKFFQKAD GFHLKRGLPD QMLYRTTMAL TLGGTIYCLI ALYMASQPRN K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.522879
Match:	1occJ
Description:	Mitochondrial cytochrome c oxidase subunit VIIa
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits