YRC Public Data Repository - Protein Structure Prediction

Protein:	BAP29_MOUSE
Organism:	Mus musculus
Length:	240 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BAP29_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|119603814, gi... - gi\|56549093\|ref\|NP_001008405.1\| B-cell receptor-associated protein BAP29 isoform a [Homo sapiens], g...	123.0	[0..1]	[229..1]
gi\|48734663, gi\|... - gi\|48734663\|gb\|AAH72342.1\| MGC83239 protein [Xenopus laevis], gi\|147902702\|ref\|NP_001085422.1\| MGC83...	118.0	[0..1]	[239..1]
gi\|54035520, gi\|... - gi\|55742817\|ref\|NP_001006981.1\| B-cell receptor-associated protein 29 [Rattus norvegicus], gi\|540355... gi\|55742817 - ref\|NP_001006981.1\| B-cell receptor-associated protein BAP29 [Rattus norvegicus]	111.0	[0..1]	[240..1]
gi\|159131600 - gi\|159131600\|gb\|EDP56713.1\| BAP31 domain protein, putative [Aspergillus fumigatus A1163] gi\|66850482, gi\|... - gi\|70996184\|ref\|XP_752847.1\| BAP31 domain protein [Aspergillus fumigatus Af293], gi\|66850482\|gb\|EAL9...	110.0	[0..1]	[190..1]
gi\|169770419 - gi\|169770419\|ref\|XP_001819679.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238487168, gi... - gi\|238487168\|ref\|XP_002374822.1\| BAP31 domain protein, putative [Aspergillus flavus NRRL3357], gi\|22... gi\|83767538 - gi\|83767538\|dbj\|BAE57677.1\| unnamed protein product [Aspergillus oryzae]	108.0	[0..1]	[191..1]
gi\|114197816, gi... - gi\|115492657\|ref\|XP_001210956.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	107.0	[0..1]	[191..1]
gi\|73981935 - gi\|73981935\|ref\|XP_533092.2\| PREDICTED: similar to B-cell receptor-associated protein BAP29 isoform ...	105.0	[0..1]	[229..51]
gi\|22204206, gi\|... - gi\|22204206\|emb\|CAD43420.1\| novel protein similar to vertebrate caldesmon 1 (CALD1) [Danio rerio], g...	105.0	[0..1]	[239..1]

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Predicted Domain #1

Region A:
Residues: [1-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIQWAAVAS FLYAEIGLIL LFCLPFIPPQ RWQKIFSFSV WGKIASFWNK AFLTIIILLI  60
   61 ILFLDAVREV RKYSSTNVVE KNSAIRPSAF EHTQMKLFRS QRNLYISGFS LFFWLVLRRL 120
  121 VTLITQLAKE IANKGVLKIQ AENTNKAAKK FMEENEKLKL GLRNDNAEEH LLEAENKKLI 180
  181 ESKENLKTEL KKASDALLKA QNDVMTMKIQ SERLSKEYDR LLKEHSELQN RLEKEKKKGL 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.522879
Match:	2dfsA
Description:	No description for 2dfsA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits