YRC Public Data Repository - Protein Structure Prediction

Protein:	APOC1_MOUSE
Organism:	Mus musculus
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APOC1_MOUSE.

Description	E-value	Query Range	Subject Range
APOC1_RAT - Apolipoprotein C-I OS=Rattus norvegicus GN=Apoc1 PE=3 SV=1	157.0	[0..1]	[88..1]
APOC1_TUPGL - Apolipoprotein C-I OS=Tupaia glis GN=APOC1 PE=3 SV=1	127.0	[0..19]	[88..19]
APOC1_CANLF - Apolipoprotein C-I OS=Canis lupus familiaris GN=APOC1 PE=1 SV=1	125.0	[0..1]	[88..1]
gi\|178834 - gi\|178834\|gb\|AAA51762.1\| apolipoprotein CI [Homo sapiens]	119.0	[0..15]	[84..1]
gi\|285199 - gi\|285199\|pir\|\|A42006 apolipoprotein C-I precursor - baboon APO1B_PAPHA - Apolipoprotein C-I, basic form OS=Papio hamadryas GN=APOC1B PE=1 SV=1	119.0	[0..1]	[84..1]
gi\|61370995, gi\|... - gi\|61371003\|gb\|AAX43591.1\| apolipoprotein C-I [synthetic construct], gi\|61370995\|gb\|AAX43590.1\| apol...	116.0	[0..1]	[84..1]
APO1B_PANTR - Apolipoprotein C-I, basic form OS=Pan troglodytes GN=APOC1B PE=1 SV=1	115.0	[0..1]	[84..1]
gi\|109125159 - gi\|109125159\|ref\|XP_001104559.1\| PREDICTED: similar to reticuloendotheliosis viral oncogene homolog ...	101.0	[0..1]	[70..113]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLFIALPVL IVVVAMTLEG PAPAQAAPDL SGTLESIPDK LKEFGNTLED KARAAIEHIK  60
   61 QKEILTKTRA WFSEAFGKVK EKLKTTFS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.30103
Match:	1iojA
Description:	HUMAN APOLIPOPROTEIN C-I, NMR, 18 STRUCTURES
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits