YRC Public Data Repository - Protein Structure Prediction

Protein:	COXM2_MOUSE
Organism:	Mus musculus
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COXM2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|76639958 - gi\|76639958\|ref\|XP_870510.1\| PREDICTED: similar to UPF0287 protein DC13 [Bos taurus]	115.0	[0..1]	[77..230]
gi\|26378936 - gi\|26378936\|dbj\|BAC25407.1\| unnamed protein product [Mus musculus]	103.0	[0..1]	[79..1]
gi\|123979754, gi... - gi\|123994527\|gb\|ABM84865.1\| chromosome 16 open reading frame 61 [synthetic construct], gi\|123979754\|... C16orf61 - chromosome 16 open reading frame 61	100.0	[0..1]	[77..1]
gi\|114663888 - gi\|114663888\|ref\|XP_511125.2\| PREDICTED: similar to DC13 [Pan troglodytes]	96.0	[0..1]	[51..313]
CE30625 - status:Confirmed UniProt:Q8MNU7 protein_id:AAM22045.1	96.0	[0..1]	[72..1]
gi\|50795800 - gi\|50795800\|ref\|XP_423810.1\| PREDICTED: similar to RIKEN cDNA 1110046L09 [Gallus gallus]	96.0	[0..1]	[73..176]
gi\|73957295 - gi\|73957295\|ref\|XP_538264.2\| PREDICTED: similar to UPF0287 protein DC13 [Canis familiaris]	92.0	[0..1]	[77..1]
gi\|159130492 - gi\|159130492\|gb\|EDP55605.1\| conserved hypothetical protein [Aspergillus fumigatus A1163] gi\|70990326, gi\|... - gi\|70990326\|ref\|XP_750012.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668476...	89.0	[0..12]	[76..74]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPDLSPHLH TEECNVLINL LKECHKNHNI LKFFGHCNDL DREMRKCLKN EYSERRTRSR  60
   61 EHGAAMRRRL SDPPEEAGR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	40.0
Match:	PF08583.1
Description:	No description for PF08583.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits