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View Structure Prediction Details

Protein: TSN8_MOUSE
Organism: Mus musculus
Length: 235 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TSN8_MOUSE.

Description E-value Query
Range		 Subject
Range
gi|76616667 - gi|76616667|ref|XP_591728.2| PREDICTED: similar to Tetraspanin-9 (Tspan-9) (Tetraspan NET-5) [Bos ta...
 195.0 [0..3] [234..227]
gi|50752761 - gi|50752761|ref|XP_413732.1| PREDICTED: similar to RIKEN cDNA C230081A13 [Gallus gallus]
 195.0 [0..1] [233..2258]
CD9_MOUSE - CD9 antigen OS=Mus musculus GN=Cd9 PE=1 SV=2
 192.0 [0..3] [234..5]
CD9_RAT - CD9 antigen OS=Rattus norvegicus GN=Cd9 PE=1 SV=2
 191.0 [0..3] [234..5]
gi|21914408 - gi|21914408|gb|AAM81376.1|AF525029_1 transmembrane protein CD9 [Sus scrofa]
 188.0 [0..3] [234..5]
gi|45387715, gi|... - gi|45387715|ref|NP_991213.1| CD151 antigen, like [Danio rerio], gi|41351246|gb|AAH65859.1| CD151 ant...
 186.0 [0..3] [235..11]
gi|148234745, gi... - gi|50415542|gb|AAH77579.1| MGC83668 protein [Xenopus laevis], gi|148234745|ref|NP_001086867.1| MGC83...
 185.0 [0..3] [235..11]

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Predicted Domain #1
Region A:
Residues: [1-110] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVSSCLKY SMFFFNFLFW VCGTLILGLA IWVRVSKDGK EIITSGDSST NPFIAVNILI  60
   61 AVGSIIMVLG FLGCCGAVKE SRCMLLLFFI GLLLILILQV AAGILGAAFK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.09
Match: 1oedC
Description: Acetylcholine receptor protein, delta chain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [111-235] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEYNRILNET LYENAKLLSD NTDEAKDFQK AMIVFQSEFK CCGLENGAAD WGNNFVEAKE  60
   61 SCQCTGTDCA TYQGSSVYPK TCLSLIKDLF EKNIIIVIGI AFGLAVIEIL GLVFSMVLYC 120
  121 QIGSK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.522879
Match: 1g8qA
Description: CD81 extracellular domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein binding 1.71804056581958 bayes_pls_golite062009
binding 1.62531598262239 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle