YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|31543752, gi\|...
Organism:	Mus musculus
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|31543752, gi|....

Description	E-value	Query Range	Subject Range
SNP29_MOUSE - Synaptosomal-associated protein 29 OS=Mus musculus GN=Snap29 PE=1 SV=1	224.0	[0..1]	[260..1]
SNP29_RAT - Synaptosomal-associated protein 29 OS=Rattus norvegicus GN=Snap29 PE=1 SV=1	220.0	[0..1]	[260..1]
SNP29_PONAB - Synaptosomal-associated protein 29 OS=Pongo abelii GN=SNAP29 PE=2 SV=1 SNP29_PONPY - Synaptosomal-associated protein 29 - Pongo pygmaeus (Orangutan)	215.0	[0..1]	[260..1]
gi\|30584569, gi\|... - gi\|61370880\|gb\|AAX43568.1\| synaptosomal-associated protein 29kDa [synthetic construct], gi\|61370875\|...	212.0	[0..1]	[260..1]
gi\|114685264 - gi\|114685264\|ref\|XP_514997.2\| PREDICTED: synaptosomal-associated protein 29 [Pan troglodytes]	212.0	[0..1]	[260..1]
gi\|109452098, gi... - gi\|60654563\|gb\|AAX31846.1\| synaptosomal-associated protein [synthetic construct], gi\|60654561\|gb\|AAX... HGNC:11133\|MIM:6... - protein, 29kDa SNAP29 - synaptosomal-associated protein, 29kDa	212.0	[0..1]	[260..1]
gi\|109093372 - gi\|109093372\|ref\|XP_001086227.1\| PREDICTED: similar to synaptosomal-associated protein 29 [Macaca mu...	212.0	[0..1]	[260..1]
gi\|73996013 - gi\|73996013\|ref\|XP_543568.2\| PREDICTED: similar to synaptosomal-associated protein 29 [Canis familia...	206.0	[0..1]	[260..1]
SNP29_BOVIN - Synaptosomal-associated protein 29 OS=Bos taurus GN=SNAP29 PE=2 SV=1	198.0	[0..1]	[260..1]

Back

Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGYPKSYNP FDDDVEEEDT RPAPWKDVRD LPDGPDAPID RQQYLRQEVL RRAEATAAST  60
   61 SRSLSLMYES EKIGVASSEE LVRQRGVLEH TEKMVDKMDQ DLKMSQKHIN SIKSVFGGFI 120
  121 NYFKSKPVEP PPEQNGSIVS QPNSRLKEAI NTSKDQENKY QASHPNLRRL QDAELDSVPK 180
  181 EPFFTVNTEV YPKNSTLRTY HQKIDSNLDE LSVGLGHLKD IALGMQTEIE EQDDILDRLT 240
  241 TKVDKLDVNI KSTEKKVRQL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.69897
Match:	1dn1B
Description:	Syntaxin 1A N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
SNAP receptor activity	3.50393203740159	bayes_pls_golite062009
binding	1.97348867258406	bayes_pls_golite062009
transporter activity	1.74189664015129	bayes_pls_golite062009
protein binding	1.63976398283458	bayes_pls_golite062009
substrate-specific transporter activity	1.2360389745429	bayes_pls_golite062009
transmembrane transporter activity	1.13101548288086	bayes_pls_golite062009
phosphatidic acid binding	0.889573999146091	bayes_pls_golite062009
protein transporter activity	0.81087535212264	bayes_pls_golite062009
SNARE binding	0.71459772253941	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.398018181744571	bayes_pls_golite062009
ion transmembrane transporter activity	0.0981818568206971	bayes_pls_golite062009
phospholipid binding	0.0172309833091902	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: