YRC Public Data Repository - Protein Structure Prediction

Protein:	DPH3_MOUSE
Organism:	Mus musculus
Length:	82 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DPH3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109503034, gi... - gi\|198442846\|ref\|NP_001128322.1\| zinc finger, CSL domain containing 2 [Rattus norvegicus], gi\|109503...	129.0	[0..1]	[82..1]
DPH3_CRIGR - DPH3 homolog OS=Cricetulus griseus GN=DPH3 PE=3 SV=1 ENSOCUP000000136... - pep:novel chromosome:oryCun2:14:2273985:2276494:-1 gene:ENSOCUG00000015862 transcript:ENSOCUT0000001...	129.0	[0..1]	[82..1]
gi\|109050692, gi... - gi\|109050695\|ref\|XP_001083944.1\| PREDICTED: zinc finger, CSL-type containing 2 isoform 2 [Macaca mul... DPH3_PONPY - DPH3 homolog - Pongo pygmaeus (Orangutan) CCDS2629.1_1 - null DPH3_PONAB - DPH3 homolog OS=Pongo abelii GN=DPH3 PE=3 SV=1 ENSCJAT00000006850 - null DPH3 - DPH3, KTI11 homolog (S. cerevisiae) DPH3_MACFA - DPH3 homolog OS=Macaca fascicularis GN=DPH3 PE=3 SV=1	128.0	[0..1]	[82..1]
gi\|114585604 - gi\|114585604\|ref\|XP_516312.2\| PREDICTED: zinc finger, CSL domain containing 2 [Pan troglodytes]	127.0	[0..1]	[82..1]
gi\|50732744 - gi\|50732744\|ref\|XP_418742.1\| PREDICTED: similar to RIKEN cDNA 2610018L09 [Gallus gallus]	127.0	[0..1]	[79..1]
DPH3_BOVIN - DPH3 homolog OS=Bos taurus GN=DPH3 PE=3 SV=1	125.0	[0..1]	[82..1]
gi\|73990534 - gi\|73990534\|ref\|XP_853149.1\| PREDICTED: similar to zinc finger, CSL domain containing 2 [Canis famil... tr\|M3W5R9\|M3W5R9... - Diphthamide biosynthesis 3 OS=Felis catus GN=DPH3 PE=4 SV=1	125.0	[0..1]	[82..1]
gi\|49088640, gi\|... - gi\|67523057\|ref\|XP_659589.1\| hypothetical protein AN1985.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	121.0	[0..4]	[68..367]
gi\|159163322, gi... - gi\|75765322\|pdb\|1WGE\|A Chain A, Solution Structure Of The Mouse Desr1, gi\|159163322\|pdb\|1WGE\|A Chain...	120.0	[0..1]	[76..8]
gi\|109005661 - gi\|109005661\|ref\|XP_001081966.1\| PREDICTED: zinc finger, CSL-type containing 2 [Macaca mulatta]	117.0	[0..1]	[82..1]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVFHDEVEI EDFQYDEDSE TYFYPCPCGD NFAITKEDLE NGEDVATCPS CSLIIKVIYD  60
   61 KDQFMCGETV PAPSTNKELV KC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	1wgeA
Description:	Solution structure of the mouse DESR1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits