YRC Public Data Repository - Protein Structure Prediction

Protein:	CB076_MOUSE
Organism:	Mus musculus
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CB076_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|55728061 - gi\|55728061\|emb\|CAH90783.1\| hypothetical protein [Pongo abelii] CB076_PONAB - UPF0538 protein C2orf76 homolog OS=Pongo abelii PE=2 SV=1	190.0	[0..1]	[126..1]
gi\|109104448 - gi\|109104448\|ref\|XP_001083237.1\| PREDICTED: hypothetical protein [Macaca mulatta]	189.0	[0..1]	[126..1]
gi\|114580581, gi... - gi\|114580581\|ref\|XP_001156029.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|114...	188.0	[0..1]	[126..1]
C2orf76 - chromosome 2 open reading frame 76	185.0	[0..1]	[126..1]
CB076_BOVIN - UPF0538 protein C2orf76 homolog OS=Bos taurus PE=2 SV=1	183.0	[0..1]	[126..1]
gi\|73984179 - gi\|73984179\|ref\|XP_533323.2\| PREDICTED: hypothetical protein XP_533323 [Canis familiaris]	179.0	[0..1]	[126..1]
gi\|44982891 - gi\|44982891\|gb\|AAS52121.1\| ADR201Wp [Ashbya gossypii ATCC 10895] gi\|45188074, gi\|... - gi\|45188074\|ref\|NP_984297.1\| ADR201Wp [Ashbya gossypii ATCC 10895], gi\|44982891\|gb\|AAS52121.1\| ADR20...	179.0	[0..2]	[126..18]
gi\|50750738 - gi\|50750738\|ref\|XP_422121.1\| PREDICTED: hypothetical protein [Gallus gallus]	179.0	[0..1]	[126..1]
orf19.3528 - orf19.3528 CGDID:CAL0005853 Assembly 19, Contig19-10183 (12000, 11572) CDS, reverse complemented, tr... gi\|68482259, gi\|... - gi\|68482259\|ref\|XP_714887.1\| hypothetical protein CaO19.3528 [Candida albicans SC5314], gi\|46436486\|... gi\|238882271 - gi\|238882271\|gb\|EEQ45909.1\| conserved hypothetical protein [Candida albicans WO-1]	178.0	[0..3]	[126..13]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAEEATLTV RLIRSFEHRN FKPVVYHGVN LHQTVKEFII FLKQDVPLRT SLPPPLRNYK  60
   61 YDTLKILHQA HKAKTNELVL GLEDDDTLLL KEDRTLKDSG VASETEIAFF CGEDYKRYKA 120
  121 NPISSW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.729	c.55.1	Actin-like ATPase domain
View	Download	0.725	c.55.1	Actin-like ATPase domain
View	Download	0.721	c.55.1	Actin-like ATPase domain
View	Download	0.705	c.13.2	Anti-sigma factor antagonist SpoIIaa
View	Download	0.686	b.1.2	Fibronectin type III
View	Download	0.655	d.15.6	Superantigen toxins, C-terminal domain
View	Download	0.614	d.15.6	Superantigen toxins, C-terminal domain
View	Download	0.593	d.15.6	Superantigen toxins, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits