YRC Public Data Repository - Protein Structure Prediction

Protein:	PDRG1_MOUSE
Organism:	Mus musculus
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDRG1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|73992122 - gi\|73992122\|ref\|XP_534380.2\| PREDICTED: similar to p53 and DNA damage-regulated protein [Canis famil...	196.0	[0..1]	[133..31]
gi\|51980327 - gi\|51980327\|gb\|AAH82021.1\| P53 and DNA damage regulated 1 [Rattus norvegicus]	193.0	[0..1]	[133..12]
gi\|7594598 - gi\|7594598\|emb\|CAB88101.1\| OTTHUMP00000030569 [Homo sapiens]	173.0	[0..1]	[133..17]
PDRG1_PONAB - p53 and DNA damage-regulated protein 1 OS=Pongo abelii GN=PDRG1 PE=2 SV=1 PDRG1_PONPY - p53 and DNA damage-regulated protein 1 - Pongo pygmaeus (Orangutan)	164.0	[0..1]	[133..1]
PDRG1_BOVIN - p53 and DNA damage-regulated protein 1 OS=Bos taurus GN=PDRG1 PE=2 SV=1	163.0	[0..1]	[133..1]
gi\|27374248 - gi\|27374248\|gb\|AAO01007.1\| CG15863-PA [Drosophila erecta]	155.0	[0..1]	[131..1]
gi\|220951368 - gi\|220951368\|gb\|ACL88227.1\| CG15863-PA [synthetic construct] CG15863-PA - This gene is referred to in FlyBase by the symbol Dmel\CG15863 (CG15863, FBgn0033467). It is a prote...	149.0	[0..1]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSPEAERVL RYLVEVEELA EAVLSDKRQI VDLDTKRNQN REGLRALQKD LSVSEDVMVC  60
   61 FGNMFIKMPH PKTKEMIQKD QEHLDKEIER LRSQLKVKVN RLFEAQGKPE LKGFNLNPLS 120
  121 PDEVKALKVI LKG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits