YRC Public Data Repository - Protein Structure Prediction

Protein:	FUND1_MOUSE
Organism:	Mus musculus
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FUND1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|74007318 - gi\|74007318\|ref\|XP_548961.2\| PREDICTED: similar to FUN14 domain containing 1 [Canis familiaris]	235.0	[0..1]	[155..1]
FUNDC1 - FUN14 domain containing 1 gi\|114688252 - gi\|114688252\|ref\|XP_001139861.1\| PREDICTED: FUN14 domain containing 1 [Pan troglodytes]	234.0	[0..1]	[155..1]
FUND1_BOVIN - FUN14 domain-containing protein 1 OS=Bos taurus GN=FUNDC1 PE=2 SV=1	234.0	[0..1]	[155..1]
gi\|109079825 - gi\|109079825\|ref\|XP_001083529.1\| PREDICTED: similar to FUN14 domain containing 1 [Macaca mulatta]	225.0	[0..1]	[155..1]
gi\|50730085 - gi\|50730085\|ref\|XP_416763.1\| PREDICTED: similar to FUN14 domain containing 1 [Gallus gallus]	213.0	[0..1]	[155..79]
gi\|33090009 - gi\|33090009\|gb\|AAP93875.1\| HCBP6 [Rattus norvegicus]	200.0	[0..11]	[142..5]
gi\|12839776, gi\|... - gi\|82889397\|ref\|XP_889408.1\| PREDICTED: similar to RIKEN cDNA 1700034I23 [Mus musculus], gi\|26346038...	198.0	[0..11]	[142..39]

Back

Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRNPPPQD YESDDESYEV LDLTEYARRH HWWNRVFGHS SGPMVEKYSV ATQIVMGGVT  60
   61 GWCAGFLFQK VGKLAATAVG GGFLLLQVAS HSGYVQIDWK RVEKDVNKAK RQIKKRANKA 120
  121 APEINNIIEE ATDFIKQNIV ISSGFVGGFL LGLAS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.638272
Match:	PF04930.6
Description:	No description for PF04930.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits