YRC Public Data Repository - Protein Structure Prediction

Protein:	CHM2A_MOUSE
Organism:	Mus musculus
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHM2A_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|74001062 - gi\|74001062\|ref\|XP_544799.2\| PREDICTED: similar to chromatin modifying protein 2B [Canis familiaris]	220.0	[0..1]	[222..581]
gi\|109493760 - gi\|109493760\|ref\|XP_001063932.1\| PREDICTED: similar to chromatin modifying protein 2B [Rattus norveg...	183.0	[0..1]	[222..248]
gi\|50731660 - gi\|50731660\|ref\|XP_418312.1\| PREDICTED: similar to Snf7 homologue associated with Alix 3 [Gallus gal...	158.0	[0..2]	[218..238]
gi\|70997117, gi\|... - gi\|70997117\|ref\|XP_753313.1\| SNF7 family protein [Aspergillus fumigatus Af293], gi\|66850949\|gb\|EAL91...	155.0	[0..1]	[221..4]
gi\|58270340, gi\|... - gi\|58270340\|ref\|XP_572326.1\| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21], g... gi\|134117768, gi... - gi\|50255132\|gb\|EAL17871.1\| hypothetical protein CNBL1330 [Cryptococcus neoformans var. neoformans B-...	153.0	[0..4]	[222..70]
gi\|114620768 - gi\|114620768\|ref\|XP_528179.2\| PREDICTED: similar to Chromatin modifying protein 4C [Pan troglodytes]	149.0	[0..1]	[218..117]
gi\|21617956 - gi\|21617956\|gb\|AAM67006.1\| unknown [Arabidopsis thaliana]	148.0	[0..1]	[221..1]
gi\|152002610, gi... - gi\|83772924\|dbj\|BAE63052.1\| unnamed protein product [Aspergillus oryzae], gi\|152002610\|dbj\|BAF73610.... gi\|169779441 - gi\|169779441\|ref\|XP_001824185.1\| hypothetical protein [Aspergillus oryzae RIB40]	147.0	[0..2]	[221..5]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLFGRRKT PEELLRQNQR ALNRAMRELD RERQKLETQE KKIIADIKKM AKQGQMDAVR  60
   61 IMAKDLVRTR RYVRKFVLMR ANIQAVSLKI QTLKSNNSMA QAMKGVTKAM GTMNRQLKLP 120
  121 QIQKIMMEFE RQAEIMDMKE EMMNDAIDDA MGDEEDEEES DAVVSQVLDE LGLSLTDELS 180
  181 NLPSTGGSLS VAAGGKKAEA TASALADADA DLEERLKNLR RD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	2gd5A
Description:	No description for 2gd5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits