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View Structure Prediction Details

Protein: TAF10_MOUSE
Organism: Mus musculus
Length: 218 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAF10_MOUSE.

Description E-value Query
Range
Subject
Range
gi|94388500, gi|... - gi|94389528|ref|XP_994512.1| PREDICTED: similar to TAF10 RNA polymerase II, TATA box binding protein...
191.0 [0..1] [218..1]
gi|73988322 - gi|73988322|ref|XP_542454.2| PREDICTED: similar to Transcription initiation factor TFIID subunit 10 ...
186.0 [0..1] [218..1]
gi|76635970 - gi|76635970|ref|XP_884349.1| PREDICTED: similar to TAF10 RNA polymerase II, TATA box binding protein...
184.0 [0..92] [218..1]
gi|61363275, gi|... - gi|61363578|gb|AAX42413.1| TAF10 RNA polymerase II TATA box binding protein-associated factor [synth...
TAF10 - TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa
182.0 [0..1] [218..1]
gi|109107476 - gi|109107476|ref|XP_001109210.1| PREDICTED: similar to Transcription initiation factor TFIID subunit...
182.0 [0..1] [218..1]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCSGSGADP EAATACAASV AGPAPLVSAP AALPTSTAAE SKASPAGTAG GPVAGVATAG  60
   61 TGPVAARAGE PAERRGPASV AAGGAAPPEG AMSNGVYALP SAANGEVKPV VSSTPLVDF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [120-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LMQLEDYTPT IPDAVTGYYL NRAGFEASDP RIIRLISLAA QKFISDIAND ALQHCKMKGT  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 39.431798
Match: PF03540.3
Description: No description for PF03540.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.819 N/A N/A a.140.2 SAP domain

Predicted Domain #3
Region A:
Residues: [180-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASGSSRSKSK DRKYTLTMED LTPALSEYGI NVKKPHYFT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle