YRC Public Data Repository - Protein Structure Prediction

Protein:	ATPO_MOUSE
Organism:	Mus musculus
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPO_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|57108786 - gi\|57108786\|ref\|XP_535587.1\| PREDICTED: similar to ATP synthase O subunit, mitochondrial precursor (...	233.0	[0..1]	[212..1]
gi\|109065448 - gi\|109065448\|ref\|XP_001090216.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F1 complex,...	225.0	[0..1]	[213..1]
ATPO_BOVIN - ATP synthase subunit O, mitochondrial OS=Bos taurus GN=ATP5O PE=1 SV=2	225.0	[0..1]	[213..1]
ATP5O - ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit gi\|55655775 - gi\|55655775\|ref\|XP_531443.1\| PREDICTED: mitochondrial ATP synthase, O subunit [Pan troglodytes]	224.0	[0..1]	[213..1]
gi\|61365630, gi\|... - gi\|61365630\|gb\|AAX42738.1\| ATP synthase H+ transporting mitochondrial F1 complex O subunit [syntheti...	224.0	[0..1]	[213..1]
gi\|74142020 - gi\|74142020\|dbj\|BAE41073.1\| unnamed protein product [Mus musculus]	224.0	[0..1]	[213..1]
ATPO_PIG - ATP synthase subunit O, mitochondrial OS=Sus scrofa GN=ATP5O PE=1 SV=1	224.0	[0..1]	[212..1]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPAASGLS RQVRSFSTSV VRPFAKLVRP PVQVYGIEGR YATALYSAAS KEKKLDQVEK  60
   61 ELLRVGQLLK DPKVSLAVLN PYIKRTVKVK SLNDITKREK FSPLTANLMN LLAENGRLGN 120
  121 TQGIISAFST IMSVHRGEVP CTVTTASPLD DAVLSELKTV LKSFLSPNQI LKLEIKTDPS 180
  181 IMGGMIVRIG EKYVDMSAKS KIQKLSKAMR EML

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	2bo5A
Description:	Bovine oligomycin sensitivity conferral protein N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits