YRC Public Data Repository - Protein Structure Prediction

Protein:	RM12_MOUSE
Organism:	Mus musculus
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM12_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|71361655 - gi\|71361655\|ref\|NP_001025071.1\| mitochondrial ribosomal protein L12 [Rattus norvegicus]	213.0	[0..1]	[201..74]
gi\|12837801 - gi\|12837801\|dbj\|BAB23955.1\| unnamed protein product [Mus musculus]	212.0	[0..1]	[201..1]
RM12_BOVIN - 39S ribosomal protein L12, mitochondrial OS=Bos taurus GN=MRPL12 PE=1 SV=1	206.0	[0..1]	[201..1]
gi\|73964761 - gi\|73964761\|ref\|XP_850016.1\| PREDICTED: similar to 39S ribosomal protein L12, mitochondrial precurso...	201.0	[0..1]	[201..1]
gi\|109119096 - gi\|109119096\|ref\|XP_001111712.1\| PREDICTED: mitochondrial ribosomal protein L12 [Macaca mulatta]	199.0	[0..1]	[201..1]
gi\|114670948 - gi\|114670948\|ref\|XP_001163363.1\| PREDICTED: mitochondrial ribosomal protein L12 [Pan troglodytes] sp\|P52815\|RM12_H... - 39S ribosomal protein L12, mitochondrial OS=Homo sapiens GN=MRPL12 PE=1 SV=2 VAR_052001, 39S ribosom...	197.0	[0..1]	[201..1]
gi\|1313962 - gi\|1313962\|emb\|CAA56249.1\| mitochondrial ribosomal protein L7L12 [Homo sapiens]	197.0	[0..1]	[201..1]
RM12_CRICR - 39S ribosomal protein L12, mitochondrial OS=Cricetus cricetus GN=MRPL12 PE=2 SV=1	180.0	[0..1]	[201..1]
gi\|50416673, gi\|... - gi\|55742214\|ref\|NP_001006886.1\| mitochondrial ribosomal protein L12 [Xenopus (Silurana) tropicalis],... gi\|55742214 - ref\|NP_001006886.1\| mitochondrial ribosomal protein L12 [Xenopus tropicalis]	161.0	[0..14]	[201..6]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPVAASRCL WGPRLGLRGA ALRLARQQMP SVCAARQLRS SSHRRSEALA GAPLDNAPKE  60
   61 YPPKIQQLVQ DIASLTLLEI SDLNELLKKT LKIQDVGLMP MGGMVPGPVS AAAPASEAAE 120
  121 EEDVPKQKER THFTVRLTEA KPVDKVKLIK EIKNYVQGIN LVQAKKLVES LPQEIKANVA 180
  181 KAEAEKIKAA LEAVGGTVVL E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	2ftcE
Description:	No description for 2ftcE was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits