YRC Public Data Repository - Protein Structure Prediction

Protein:	CLF2A_MOUSE
Organism:	Mus musculus
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLF2A_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|157928480, gi... - gi\|157928480\|gb\|ABW03536.1\| CKLF-like MARVEL transmembrane domain containing 2 [synthetic construct]... CMTM2 - CKLF-like MARVEL transmembrane domain containing 2	208.0	[0..12]	[168..54]
CLF2B_MOUSE - CKLF-like MARVEL transmembrane domain-containing protein 2B OS=Mus musculus GN=Cmtm2b PE=2 SV=1	205.0	[0..1]	[169..1]
gi\|114662965 - gi\|114662965\|ref\|XP_001157404.1\| PREDICTED: similar to CKLF-like MARVEL transmembrane domain contain...	204.0	[0..12]	[168..40]
gi\|50925577, gi\|... - gi\|61557079\|ref\|NP_001013160.1\| CKLF-like MARVEL transmembrane domain containing 2A [Rattus norvegic...	202.0	[0..1]	[167..1]
gi\|109128828 - gi\|109128828\|ref\|XP_001085127.1\| PREDICTED: similar to chemokine-like factor superfamily 2 isoform 3...	201.0	[0..12]	[168..38]
gi\|67969128 - gi\|67969128\|dbj\|BAE00918.1\| unnamed protein product [Macaca fascicularis]	199.0	[0..12]	[168..38]
gi\|73957549 - gi\|73957549\|ref\|XP_536824.2\| PREDICTED: similar to chemokine-like factor superfamily 2 [Canis famili...	188.0	[0..13]	[168..29]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPIKFPFR PRGGQPREDT TPKRGLRRYL LELKESNKEF WLSGHAVFKL LSLGCMISAL  60
   61 DYFETMLPHP VLILLICMEA AICIFFIFLN TLAINRYIPF VFWPMADIFN SLFSCVFLGG 120
  121 GIYFAFKARR LLPKPYLTAM ILMGAAAICS FIDMLLQFQH FRGLRLRKW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits