YRC Public Data Repository - Protein Structure Prediction

Protein:	SNAA_MOUSE
Organism:	Mus musculus
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNAA_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|47224733 - gi\|47224733\|emb\|CAG00327.1\| unnamed protein product [Tetraodon nigroviridis]	177.0	[0..1]	[295..1148]
gi\|25534507 - pir\|\|AH2108 hypothetical protein all2423 [imported] - Nostoc sp. (strain PCC 7120) gi\|17229915, gi\|... - gi\|17229915\|ref\|NP_486463.1\| hypothetical protein all2423 [Nostoc sp. PCC 7120], gi\|17131515\|dbj\|BAB...	168.0	[0..1]	[291..329]
gi\|109470977, gi... - gi\|62645998\|ref\|XP_575249.1\| PREDICTED: similar to N-ethylmaleimide sensitive fusion protein attachm...	166.0	[0..1]	[292..61]
gi\|56967372, gi\|... - gi\|62821820\|ref\|NP_001017359.1\| O-linked N-acetylglucosamine transferase isoform 1 [Danio rerio], gi...	164.0	[0..1]	[292..167]
gi\|115936542, gi... - gi\|115936542\|ref\|XP_001177116.1\| PREDICTED: similar to UDP-N-acetylglucosaminyltransferase [Strongyl...	164.0	[0..1]	[292..157]
gi\|91079875 - gi\|91079875\|ref\|XP_967579.1\| PREDICTED: similar to CG10392-PB, isoform B [Tribolium castaneum]	163.0	[0..1]	[292..304]
gi\|76659287 - gi\|76659287\|ref\|XP_885188.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 13 ...	162.0	[0..2]	[288..77]

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Predicted Domain #1

Region A:
Residues: [1-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNSGKQAEA MALLAEAERK VKNSQSFFSG LFGGSSKIEE ACEIYARAAN MFKMAKNWSA  60
   61 AGNAFCQAAQ LHLQLQSKHD AATCFVDAGN AFKKADPQEA INCLMRAIEI YTDMGRFTIA 120
  121 AKHHISIAEI YETELVDVEK AIAHYEQSAD YYKGEESNSS ANKCLLKVAG YAAQLEQYQK 180
  181 AIDIYEQVGT SAMDSPLLKY SAKDYFFKAA LCHFCIDMLN AKLAVQKYEE LFPAFSDSRE 240
  241 CKLMKKLLEA HEEQNVDSYT EAVKEYDSIS RLDQWLTTML LRIKKTIQGD EEDLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	1qqeA
Description:	Vesicular transport protein sec17
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
soluble NSF attachment protein activity	5.88260989493554	bayes_pls_golite062009
binding	2.09193012129784	bayes_pls_golite062009
protein binding	1.52807685989528	bayes_pls_golite062009
signal sequence binding	1.13935627118933	bayes_pls_golite062009
peroxisome targeting sequence binding	0.158175726439206	bayes_pls_golite062009
syntaxin binding	0.0598606763736398	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: