YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12837883, gi\|...
Organism:	Mus musculus
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12837883, gi|....

Description	E-value	Query Range	Subject Range
CG13994-PA, FBpp... - This gene is referred to in FlyBase by the symbol Dmel\CG13994 (CG13994, FBgn0031772). It is a prote... gi\|220957912, gi... - gi\|220957912\|gb\|ACL91499.1\| CG13994-PA [synthetic construct], gi\|220951008\|gb\|ACL88047.1\| CG13994-PA...	129.0	[0..6]	[130..14]
gi\|47087115, gi\|... - gi\|47087115\|ref\|NP_997707.1\| protein phosphatase 1, regulatory (inhibitor) subunit 11 [Rattus norveg...	124.0	[0..1]	[104..1]
PP1RB_PANTR - Protein phosphatase 1 regulatory subunit 11 OS=Pan troglodytes GN=PPP1R11 PE=3 SV=1 PP1RB_MACMU - Protein phosphatase 1 regulatory subunit 11 OS=Macaca mulatta GN=PPP1R11 PE=3 SV=1 PPP1R11 - protein phosphatase 1, regulatory (inhibitor) subunit 11	120.0	[0..1]	[107..1]
PP1RB_MOUSE - Protein phosphatase 1 regulatory subunit 11 OS=Mus musculus GN=Ppp1r11 PE=1 SV=1	119.0	[0..1]	[104..1]
gi\|56805537, gi\|... - gi\|56805537\|dbj\|BAD83387.1\| protein phosphatase 1 [Sus scrofa], gi\|56805531\|dbj\|BAD83382.1\| protein ... gi\|149754700 - gi\|149754700\|ref\|XP_001495355.1\| PREDICTED: similar to protein phosphatase 1, regulatory (inhibitor)...	119.0	[0..1]	[107..1]
gi\|194677488, gi... - gi\|61861672\|ref\|XP_581027.1\| PREDICTED: similar to HCG V isoform 2 [Bos taurus], gi\|194677488\|ref\|XP...	116.0	[0..1]	[104..1]
gi\|39589189, gi\|... - gi\|39589189\|emb\|CAE57922.1\| Hypothetical protein CBG00975 [Caenorhabditis briggsae], gi\|187038635\|em... gi\|157748913 - gi\|157748913\|ref\|XP_001678170.1\| Hypothetical protein CBG00975 [Caenorhabditis briggsae AF16]	116.0	[0..22]	[98..363]
gi\|74004028 - gi\|74004028\|ref\|XP_849792.1\| PREDICTED: similar to protein phosphatase 1, regulatory (inhibitor) sub...	116.0	[0..1]	[105..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAETGAGISE TVTETTVTET TVTETTEPEN QSLTMKLRKR KPEKKVEWSS DTVDNEHMGR  60
   61 RSSKCCCIYE KPRAFGESST ESDEDEEEGC SHKHCVRGHR KGRRPTTPAP TPTTPPQPPD 120
  121 PSKPPPGPMQ H

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.420216
Match:	PF07491.2
Description:	No description for PF07491.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits