YRC Public Data Repository - Protein Structure Prediction

Protein:	MED31_MOUSE
Organism:	Mus musculus
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MED31_MOUSE.

Description	E-value	Query Range	Subject Range
ENSMMUG000000037... - null, null MED31 - mediator complex subunit 31 ENSPTRT00000015946 - null ENSCJAT00000021710 - null	199.0	[0..1]	[131..1]
MED31_BOVIN - Mediator of RNA polymerase II transcription subunit 31 OS=Bos taurus GN=MED31 PE=2 SV=1	198.0	[0..1]	[131..1]
gi\|12851595, gi\|... - ref\|NP_080344.1\| RIKEN cDNA 3110004H13 [Mus musculus], gi\|12851595\|dbj\|BAB29102.1\| unnamed protein ...	197.0	[0..1]	[131..1]
gi\|48122204 - gi\|48122204\|ref\|XP_393244.1\| PREDICTED: similar to Mediator of RNA polymerase II transcription subun...	191.0	[0..6]	[127..24]
gi\|114666039 - gi\|114666039\|ref\|XP_523838.2\| PREDICTED: similar to CGI-125 protein [Pan troglodytes] gi\|109112964 - gi\|109112964\|ref\|XP_001103338.1\| PREDICTED: similar to Mediator of RNA polymerase II transcription s...	190.0	[0..7]	[131..1]
gi\|72040230, gi\|... - gi\|72040230\|ref\|XP_794567.1\| PREDICTED: similar to CGI-125 protein [Strongylocentrotus purpuratus], ...	190.0	[0..6]	[123..16]
gi\|109491232, gi... - gi\|109491232\|ref\|XP_001080168.1\| PREDICTED: similar to Mediator of RNA polymerase II transcription s...	189.0	[0..7]	[131..1]
MED31_AEDAE - Mediator of RNA polymerase II transcription subunit 31 OS=Aedes aegypti GN=MED31 PE=3 SV=1	184.0	[0..3]	[115..9]
gi\|220944342, gi... - gi\|220954132\|gb\|ACL89609.1\| MED31-PA [synthetic construct], gi\|220944342\|gb\|ACL84714.1\| MED31-PA [sy... FBpp0293855, MED... - The gene Mediator complex subunit 31 is referred to in FlyBase by the symbol Dmel\MED31 (CG1057, FBg...	184.0	[0..3]	[117..8]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAVAMETD DAGNRLRFQL ELEFVQCLAN PNYLNFLAQR GYFKDKAFVN YLKYLLYWKE  60
   61 PEYAKYLKYP QCLHMLELLQ YEHFRKELVN AQCAKFIDEQ QILHWQHYSR KRVRLQQALA 120
  121 EQQQQNNTAG K

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	74.0
Match:	PF05669.3
Description:	No description for PF05669.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.411	N/A	N/A	a.173.1	tRNA CCA-adding enzyme, C-terminal domains
View	Download	0.411	N/A	N/A	a.173.1	tRNA CCA-adding enzyme, C-terminal domains
View	Download	0.400	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.385	N/A	N/A	a.8.4	Description not found.
View	Download	0.376	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.357	N/A	N/A	d.211.2	Plakin repeat
View	Download	0.357	N/A	N/A	d.211.2	Plakin repeat
View	Download	0.317	N/A	N/A	a.118.11	Cytochrome c oxidase subunit E
View	Download	0.312	N/A	N/A	a.92.1	Carbamoyl phosphate synthetase, large subunit connection domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits