YRC Public Data Repository - Protein Structure Prediction

Protein:	NPY_MOUSE
Organism:	Mus musculus
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NPY_MOUSE.

Description	E-value	Query Range	Subject Range
NPY_XENLA - Pro-neuropeptide Y OS=Xenopus laevis GN=npy PE=3 SV=1	166.0	[0..1]	[97..1]
gi\|112419089, gi... - gi\|134024445\|gb\|AAI35388.1\| Neuropeptide Y [Xenopus tropicalis], gi\|118405076\|ref\|NP_001072530.1\| ne...	165.0	[0..1]	[97..1]
NPY_TYPNA - Pro-neuropeptide Y OS=Typhlonectes natans GN=npy PE=1 SV=1	164.0	[0..1]	[97..1]
NPY_CHICK - Pro-neuropeptide Y OS=Gallus gallus GN=NPY PE=3 SV=1	162.0	[0..1]	[97..1]
NPY_RAT - Pro-neuropeptide Y OS=Rattus norvegicus GN=Npy PE=1 SV=1	162.0	[0..1]	[97..2]
PYYA_DANRE - Peptide YY-A OS=Danio rerio GN=pyya PE=2 SV=1	161.0	[0..1]	[97..1]
gi\|124000283, gi... - gi\|124000283\|gb\|ABM87650.1\| neuropeptide Y [synthetic construct], gi\|123993319\|gb\|ABM84261.1\| neurop... HGNC:7955\|MIM:16... - Y NPY - neuropeptide Y	159.0	[0..1]	[97..1]
NPY_MACMU - Pro-neuropeptide Y OS=Macaca mulatta GN=NPY PE=1 SV=1 CCDS5387.1_1 - null	158.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGNKRMGLC GLTLALSLLV CLGILAEGYP SKPDNPGEDA PAEDMARYYS ALRHYINLIT  60
   61 RQRYGKRSSP ETLISDLLMK ESTENAPRTR LEDPSMW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.637	a.60.9	lambda integrase-like, N-terminal domain
View	Download	0.473	a.4.1	Homeodomain-like
View	Download	0.452	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.435	a.112.1	Description not found.
View	Download	0.364	a.4.1	Homeodomain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits