YRC Public Data Repository - Protein Structure Prediction

Protein:	CLF2B_MOUSE
Organism:	Mus musculus
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLF2B_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|157928480, gi... - gi\|157928480\|gb\|ABW03536.1\| CKLF-like MARVEL transmembrane domain containing 2 [synthetic construct]... CMTM2 - CKLF-like MARVEL transmembrane domain containing 2	181.0	[0..3]	[179..47]
gi\|114662965 - gi\|114662965\|ref\|XP_001157404.1\| PREDICTED: similar to CKLF-like MARVEL transmembrane domain contain...	177.0	[0..3]	[179..33]
CLF2A_MOUSE - CKLF-like MARVEL transmembrane domain-containing protein 2A OS=Mus musculus GN=Cmtm2a PE=2 SV=1	173.0	[0..1]	[164..1]
gi\|109128828 - gi\|109128828\|ref\|XP_001085127.1\| PREDICTED: similar to chemokine-like factor superfamily 2 isoform 3...	170.0	[0..3]	[179..31]
gi\|67969128 - gi\|67969128\|dbj\|BAE00918.1\| unnamed protein product [Macaca fascicularis]	167.0	[0..3]	[179..31]
gi\|109508325, gi... - gi\|27658344\|ref\|XP_226200.1\| PREDICTED: similar to chemokine-like factor super family 3 [Rattus norv...	156.0	[0..3]	[154..9]
gi\|73957551 - gi\|73957551\|ref\|XP_854118.1\| PREDICTED: similar to chemokine-like factor superfamily 1 isoform 13 [C...	155.0	[0..2]	[170..99]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPAPRART GGKKKDERRG FKGYKWEFRD SNKDFWAQGH AECKSLIMIL LIAAMVCFQR  60
   61 VATHPIVILL LTMELSICAF FFFLYSLAIN RYIPFVFWPM MDLMNDLACS TFLIGGIFFA 120
  121 LEARRELPVP YLTGMILMGV TAFIS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	22.69897
Match:	PF01284.14
Description:	No description for PF01284.14 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [146-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IIDLCLQRRQ FKSRKLRKFI LLTPDRKGKK QDPKLLLMLA AKEDEEERQR ELAEKAKRES  60
   61 MDPGW

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.956
Match:	1bb9A
Description:	CRYSTAL STRUCTURE OF THE SH3 DOMAIN FROM RAT AMPHIPHYSIN 2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits