YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|148672805, gi...
Organism:	Mus musculus
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|148672805, gi....

Description	E-value	Query Range	Subject Range
gi\|16716549, gi\|... - gi\|16716549\|ref\|NP_444463.1\| vomeronasal 1 receptor, C3 [Mus musculus], gi\|11967419\|gb\|AAG42093.1\|AF...	373.0	[0..1]	[294..1]
gi\|40557353, gi\|... - gi\|57164047\|ref\|NP_001009527.1\| vomeronasal 1 receptor, C42 [Rattus norvegicus], gi\|40557353\|gb\|AAR8...	373.0	[0..1]	[296..1]

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Predicted Domain #1

Region A:
Residues: [1-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIKNILYF QAGLGVLANM FLLTFYIFTI PCHSPKPVDL ISCQLTFIHI IMVLTGWDIW  60
   61 LTDMFELLNI ENDFKCKATF YINRVMRGLS ICITCPLSVF QAVTISPSTS LLAKFKHKLK 120
  121 KYIIYAFFYV WSFNLSFSSN QFFSVGAYAN LSETSQMKVT NYCSHFPMNN IIRGLILTVT 180
  181 TLRDVFLVGV MLTTSSYMVV FLCRHQRQCQ HLHSIRHLRA SPEKKATQII LLLVVFFVVM 240
  241 YWVDFFISST SILLWRYDPV ILTVQKFVMN AYPTITPLVQ ITSDERIINV LKNLWP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	6.76
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits