YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|124297338, gi...
Organism: Mus musculus
Length: 299 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124297338, gi....

Description E-value Query
Range
Subject
Range
gi|16716549, gi|... - gi|16716549|ref|NP_444463.1| vomeronasal 1 receptor, C3 [Mus musculus], gi|11967419|gb|AAG42093.1|AF...
379.0 [0..1] [299..1]
gi|40557353, gi|... - gi|57164047|ref|NP_001009527.1| vomeronasal 1 receptor, C42 [Rattus norvegicus], gi|40557353|gb|AAR8...
370.0 [0..1] [298..1]

Back

Predicted Domain #1
Region A:
Residues: [1-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLENVFYI QAGLGILANL FLLFFYTSKI LVDRPKPMDL ISSQLTFIHI MMILSEGDNL  60
   61 LANILESLKL GNDIKCKTTF YINRVMRGLS VCITCLLSVF QAVTISPSTS FLAQFKNKVK 120
  121 THIIYAFFYF WSFNLSFSSR LIFYVAGFTN VSGTHQMKVT KSCSLFPMNY IIRGLILTVA 180
  181 ISRDVFLVGL MLTTSTYMVI ILCRHQRQCK HLHSNSHIRA SPEERATQTI LLLVVFFVVM 240
  241 YWLDFIISFT STLSWMYVPV VLTVQKLVMY AYPTISPLVQ ITSDKRIISI LKNVHSKFH

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 6.76
Match: 1f88A
Description: Rhodopsin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle