YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21717695, gi\|...
Organism:	Mus musculus
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21717695, gi|....

Description	E-value	Query Range	Subject Range
gi\|74354410, gi\|... - gi\|74355402\|gb\|AAI04400.1\| Vomeronasal 1 receptor, C3 [Mus musculus], gi\|74354410\|gb\|AAI04399.1\| Vom...	376.0	[0..1]	[297..1]
gi\|40557353, gi\|... - gi\|57164047\|ref\|NP_001009527.1\| vomeronasal 1 receptor, C42 [Rattus norvegicus], gi\|40557353\|gb\|AAR8...	368.0	[0..1]	[297..1]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSNTVLYF QAGFGVLVNM FLLFFYTFII LCHRPKPMDL FSCQLTFIHI MMILTGGDTL  60
   61 LADILESLKF GNDIKCKTVF YINRVMRGLS ICITCLLSVF QAVTISPNTF LFAKFKQKLK 120
  121 KYMMYAFFYL WSFNVLFSSR WFFYVAGFTN MSETHQMKVS KSCFLYPVNH IIRGLMLTVA 180
  181 MSRDVFLVGV MMTTSTYMVI ILFRHQRQCK HLHSISNLRG SPEKRATQII LLLVVFFVVM 240
  241 YWVDFIISFT SILLWAYDPV VLTVQMFVMN IYPTITPVVQ ISSDKRIINV LKNLRSE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	6.68
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits