YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|111601339, gi...
Organism:	Mus musculus
Length:	298 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|111601339, gi....

Description	E-value	Query Range	Subject Range
gi\|32493192 - gi\|32493192\|gb\|AAP85621.1\| pheromone receptor [Homo sapiens]	371.0	[0..1]	[297..1]
gi\|114678742 - gi\|114678742\|ref\|XP_001162685.1\| PREDICTED: similar to V1R-like receptor 2 [Pan troglodytes]	361.0	[0..13]	[296..170]
VN1R4_PONPY - Vomeronasal type-1 receptor 4 OS=Pongo pygmaeus GN=VN1R4 PE=3 SV=1	350.0	[0..1]	[297..1]
gi\|32493155 - gi\|32493155\|gb\|AAP85608.1\| pheromone receptor [Gorilla gorilla]	346.0	[0..1]	[297..41]

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Predicted Domain #1

Region A:
Residues: [1-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLRTMIVGI VLSLQTALGI LGNVSLLFYY LIIYYNEHTM KKIDMILIHV FTSNFLTILS  60
   61 KGLPEVVKAF GWKQLFSDVG CKLTNYFQRL ARSMSISTTC FLSVFQAITI SPRNSCLKEY 120
  121 KTKTTKFMGL FFSLCWILFI LVNMLFPIYT ATNRNKKNKT QKRDFEFCHS IGRDKLVDIM 180
  181 YTAFCVFPEV IFSLLIVSSS AFMIFILYGH KKRVQHTLHI HASIRNSAEN RATHNILTLV 240
  241 CTFLAFYTLS SILQGYIALS NNPSWWVMNI TAIISMCFPT LGPIVISPDF AISRFCFT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	7.71
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits