YRC Public Data Repository - Protein Structure Prediction

Protein:	RM36_MOUSE
Organism:	Mus musculus
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM36_MOUSE.

Description	E-value	Query Range	Subject Range
RM36_RAT - 39S ribosomal protein L36, mitochondrial OS=Rattus norvegicus GN=Mrpl36 PE=3 SV=1	123.0	[0..1]	[102..1]
MRPL36 - mitochondrial ribosomal protein L36 ENSPTRT00000031035 - null	122.0	[0..1]	[102..1]
gi\|114577938 - gi\|114577938\|ref\|XP_517616.2\| PREDICTED: similar to putative BRCA1-interacting protein [Pan troglody...	116.0	[0..1]	[102..32]
orf19.8380, orf1... - orf19.760 CGDID:CAL0001889 Assembly 19, Contig19-10073 (26337, 26708) CDS, translated using codon ta... gi\|68484933, gi\|... - gi\|68485008\|ref\|XP_713570.1\| likely mitochondrial ribosomal protein L36 [Candida albicans SC5314], g...	105.0	[0..32]	[101..53]
gi\|85093100 - gi\|85093100\|ref\|XP_959628.1\| hypothetical protein NCU06038 [Neurospora crassa OR74A] gi\|32410825, gi\|... - gi\|32410825\|ref\|XP_325893.1\| predicted protein [Neurospora crassa], gi\|28921073\|gb\|EAA30392.1\| predi...	104.0	[0..1]	[101..1]
gi\|116126709, gi... - gi\|118787253\|ref\|XP_315957.3\| ENSANGP00000014147 [Anopheles gambiae str. PEST], gi\|116126709\|gb\|EAA1...	104.0	[0..6]	[102..5]
RTC6 - Homolog of the prokaryotic ribosomal protein L36, likely to be a mitochondrial ribosomal protein cod... RTC6_YEAST - 54S ribosomal protein RTC6, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...	99.0	[0..17]	[101..2]
gi\|220959306, gi... - gi\|220959306\|gb\|ACL92196.1\| mRpL36-PA [synthetic construct], gi\|220950322\|gb\|ACL87704.1\| mRpL36-PA [... mRpL36-PA - The gene mitochondrial ribosomal protein L36 is referred to in FlyBase by the symbol Dmel\mRpL36 (CG...	95.0	[0..19]	[102..10]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALLVRSVV ASVVDPFLHL SRLAVKPRVF SSFLLGTLPR AKPCAEVRSV LCGRPLPTLL  60
   61 PSLGFKTKGV IKKRCKDCYK VKRRGRWFIL CKTNPKHKQR QM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits