YRC Public Data Repository - Protein Structure Prediction

Protein:	BRMS1_MOUSE
Organism:	Mus musculus
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BRMS1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|119594921, gi... - gi\|68348702\|ref\|NP_001020128.1\| breast cancer metastasis suppressor 1 isoform 2 [Homo sapiens], gi\|1...	196.0	[0..1]	[244..1]
gi\|109497459, gi... - gi\|109497459\|ref\|XP_001080131.1\| PREDICTED: similar to Sin3 histone deacetylase corepressor complex ...	196.0	[0..18]	[239..555]
gi\|114638686 - gi\|114638686\|ref\|XP_001171289.1\| PREDICTED: breast cancer metastasis suppressor 1 isoform 3 [Pan tro...	195.0	[0..1]	[244..1]
gi\|68405351 - gi\|68405351\|ref\|XP_691350.1\| PREDICTED: similar to breast cancer metastasis-suppressor 1-like [Danio...	189.0	[0..1]	[245..1]
BRM1L_MOUSE - Breast cancer metastasis-suppressor 1-like protein OS=Mus musculus GN=Brms1l PE=2 SV=1	184.0	[0..1]	[246..1]
gi\|90081196 - gi\|90081196\|dbj\|BAE90078.1\| unnamed protein product [Macaca fascicularis] gi\|109105296 - gi\|109105296\|ref\|XP_001110378.1\| PREDICTED: similar to breast cancer metastasis suppressor 1 isoform...	183.0	[0..1]	[246..1]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIQPSGKET EEMEAEGDSA AEMNGEADES EEERSGSQTE SEEESSEMDD EDYERRRSEC  60
   61 VSEMLDLEKQ FSELKEKLFR ERLSQLRLRL EEVGAERAPE YTEPLGGLQQ SLKIRIQVAG 120
  121 IYKGFCLDVI RNKYECELQG AKQHLESEKM LLYDTLLGEL QERIQRLEED RQSLDISSEW 180
  181 WDDKLHSRSS SKAGDAMPPS KRKKAPLVSG PYIVYMLQEI DILEDWTAIK KARAAVSPQK 240
  241 RKADGP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	1qvrA
Description:	Crystal Structure Analysis of ClpB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits