YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|187950905, gi...
Organism:	Mus musculus
Length:	289 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|187950905, gi....

Description	E-value	Query Range	Subject Range
gi\|71361647, gi\|... - gi\|71361647\|ref\|NP_776256.2\| vomeronasal 1 receptor 4 [Homo sapiens], gi\|32493188\|gb\|AAP85619.1\| phe...	364.0	[0..1]	[288..1]
gi\|114678742 - gi\|114678742\|ref\|XP_001162685.1\| PREDICTED: similar to V1R-like receptor 2 [Pan troglodytes]	358.0	[0..13]	[287..170]
gi\|16716549, gi\|... - gi\|16716549\|ref\|NP_444463.1\| vomeronasal 1 receptor, C3 [Mus musculus], gi\|11967419\|gb\|AAG42093.1\|AF...	348.0	[0..8]	[289..4]

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Predicted Domain #1

Region A:
Residues: [1-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENSDIVISV IFLSQTVVGI LGNSFLVYHY LMLYYMRCRL KFTDWILQHL IVANFLTLLC  60
   61 KGIPHTVSAF GLKNFLDDIG CKLTFYLHRI GRGVSISSTC FLSVFQAITI SPSASRWTQL 120
  121 KAKSPSYIAS CVYMSWALSF LVNIAFPMDM RARQNNRNIT RLRVYGICST VHHNKVSDII 180
  181 NAVLLSIPDV VFMVLMVWSS GYMVCILYRH KQRMKHIHRS TFSFRSSAEF RATKTILLLV 240
  241 STFVFFYTIS CLFQINLALF HNPTSLWVNM ASVVTACFPT VSPFLVISS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	6.76
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits