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View Structure Prediction Details

Protein: TMED4_MOUSE
Organism: Mus musculus
Length: 227 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TMED4_MOUSE.

Description E-value Query
Range
Subject
Range
gi|109066641, gi... - gi|109066643|ref|XP_001091631.1| PREDICTED: similar to transmembrane emp24 protein transport domain ...
280.0 [0..1] [227..1]
gi|149047669, gi... - gi|27697481|ref|XP_223611.1| PREDICTED: similar to transmembrane emp24 protein transport domain cont...
279.0 [0..1] [227..1]
TMED9 - transmembrane emp24 protein transport domain containing 9
272.0 [0..1] [227..9]
gi|114613157 - gi|114613157|ref|XP_001145929.1| PREDICTED: transmembrane emp24 protein transport domain containing ...
269.0 [0..1] [227..1]
gi|73970438 - gi|73970438|ref|XP_538565.2| PREDICTED: similar to transmembrane emp24 protein transport domain cont...
264.0 [0..1] [227..9]
TMED9_MOUSE - Transmembrane emp24 domain-containing protein 9 OS=Mus musculus GN=Tmed9 PE=1 SV=2
262.0 [0..1] [227..9]

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Predicted Domain #1
Region A:
Residues: [1-63]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVGVGPLQ GMVRFGLLVL TVCAACARGL YFHIGETEKR CFIEEIPDET MVIGNYRTQM  60
   61 WDK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [64-139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKEVFLPSTP GLGMHVEVKD PDGKVVLSRQ YGSEGRFTFT SHTPGDHQIC LHSNSTRMAL  60
   61 FAGGKLRVHL DIQVGE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 16.677781
Match: PF01105.15
Description: No description for PF01105.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [140-227]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HANNYPEIAA KDKLTELQLR ARQLLDQVEQ IQKEQDYQRY REERFRLTSE STNQRVLWWS  60
   61 IAQTVILILT GIWQMRHLKS FFEAKKLV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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