YRC Public Data Repository - Protein Structure Prediction

Protein:	UCN2_MOUSE
Organism:	Mus musculus
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UCN2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|115494920, gi... - gi\|115494920\|ref\|NP_001069998.1\| urocortin 2 [Bos taurus], gi\|114050533\|dbj\|BAF30968.1\| urocortin 2 ...	163.0	[0..1]	[112..1]
UCN2_RAT - Urocortin-2 OS=Rattus norvegicus GN=Ucn2 PE=3 SV=1	146.0	[0..1]	[112..1]
gi\|109039977 - gi\|109039977\|ref\|XP_001097967.1\| PREDICTED: similar to urocortin 2 preproprotein [Macaca mulatta]	141.0	[0..1]	[112..53]
UCN2 - urocortin 2 gi\|123995193, gi... - gi\|123995193\|gb\|ABM85198.1\| urocortin 2 [synthetic construct], gi\|123980374\|gb\|ABM82016.1\| urocortin...	131.0	[0..1]	[111..1]
gi\|159155889, gi... - gi\|94732536\|emb\|CAK05112.1\| novel protein similar to vertebrate urocortin 3 (stresscopin) (UCN3) [Da...	115.0	[0..26]	[112..47]
gi\|47207292 - gi\|47207292\|emb\|CAG07278.1\| unnamed protein product [Tetraodon nigroviridis]	108.0	[0..30]	[112..61]
gi\|111185665 - gi\|111185665\|gb\|AAI19435.1\| Ucn3 protein [Mus musculus]	95.0	[0..62]	[112..112]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRWALVVFV VLMLDRILFV PGTPIPTFQL LPQNSLETTP SSVTSESSSG TTTGPSASWS  60
   61 NSKASPYLDT RVILSLDVPI GLLRILLEQA RYKAARNQAA TNAQILAHVG RR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits