YRC Public Data Repository - Protein Structure Prediction

Protein:	ATG10_MOUSE
Organism:	Mus musculus
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG10_MOUSE.

Description	E-value	Query Range	Subject Range
ATG10 - ATG10 autophagy related 10 homolog (S. cerevisiae) gi\|123997937, gi... - gi\|123997937\|gb\|ABM86570.1\| ATG10 autophagy related 10 homolog (S. cerevisiae) [synthetic construct]...	316.0	[0..2]	[215..3]
gi\|55624036 - gi\|55624036\|ref\|XP_517669.1\| PREDICTED: hypothetical protein [Pan troglodytes]	312.0	[0..2]	[215..3]
gi\|109077825 - gi\|109077825\|ref\|XP_001111368.1\| PREDICTED: similar to APG10 autophagy 10-like [Macaca mulatta]	311.0	[0..2]	[215..3]
gi\|148668653, gi... - gi\|31338835\|dbj\|BAC77060.1\| Apg10p [Mus musculus], gi\|26346210\|dbj\|BAC36756.1\| unnamed protein produ...	310.0	[0..1]	[215..1]
gi\|157824002, gi... - gi\|157824002\|ref\|NP_001102975.1\| autophagy-related 10 [Rattus norvegicus], gi\|149058992\|gb\|EDM09999....	303.0	[0..1]	[215..1]
gi\|73952324 - gi\|73952324\|ref\|XP_852603.1\| PREDICTED: similar to APG10 autophagy 10-like [Canis familiaris]	290.0	[0..2]	[215..3]
gi\|50761977 - gi\|50761977\|ref\|XP_424902.1\| PREDICTED: similar to APG10 autophagy 10-like [Gallus gallus]	226.0	[0..2]	[209..5]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDEFFGEKS FQHYCAEFIR HSQQIGDGWE WRTAKECSDG YMCKTQFRIK NEASTPHVGT  60
   61 PASVLTCLPT EENLELPMDD SEVTRPAAVA EVIKHEYHVL YSCSYQVPVL YFRASFLDGR 120
  121 PLALEDIWEG VHECYKPRLL QGPWDTITQQ EHPILGQPFF VLHPCKTNEF MTAVLKNSQK 180
  181 INRNVNYITS WLSLVGPVVG LNLPLSYAKA TSQSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	2dytA
Description:	No description for 2dytA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits