YRC Public Data Repository - Protein Structure Prediction

Protein:	ZDHC3_MOUSE
Organism:	Mus musculus
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ZDHC3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|62184145, gi\|... - gi\|84781731\|ref\|NP_001034103.1\| zinc finger, DHHC-type containing 3 [Rattus norvegicus], gi\|62184145...	289.0	[0..1]	[299..1]
gi\|57101288 - gi\|57101288\|ref\|XP_533859.1\| PREDICTED: similar to zinc finger, DHHC domain containing 3 isoform 1 [...	286.0	[0..1]	[299..1]
gi\|115497202, gi... - gi\|76625692\|ref\|XP_876909.1\| PREDICTED: similar to zinc finger, DHHC domain containing 3 isoform 5 [...	282.0	[0..1]	[299..1]
gi\|109041131 - gi\|109041131\|ref\|XP_001114753.1\| PREDICTED: zinc finger, DHHC-type containing 3 isoform 3 [Macaca mu...	271.0	[0..1]	[299..1]
gi\|26348599 - gi\|26348599\|dbj\|BAC37939.1\| unnamed protein product [Mus musculus]	270.0	[0..1]	[299..1]
gi\|114586456, gi... - gi\|114586456\|ref\|XP_001146867.1\| PREDICTED: DHHC1 protein isoform 6 [Pan troglodytes], gi\|114586454\|... gi\|119585133, gi... - gi\|206597477\|ref\|NP_001128651.1\| zinc finger, DHHC-type containing 3 isoform 1 [Homo sapiens], gi\|17... gi\|254071545, gi... - gi\|254071547\|gb\|ACT64533.1\| zinc finger, DHHC-type containing 3 protein [synthetic construct], gi\|25...	269.0	[0..1]	[299..1]
gi\|56789412, gi\|... - gi\|89272059\|emb\|CAJ82857.1\| zinc finger, DHHC domain containing 3 [Xenopus tropicalis], gi\|58332276\|...	269.0	[0..2]	[299..1]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLIPTHHFR DIERKPEYLQ PEKCAPPPFP GPAGAMWFIR DGCGIACAIV TWFLVLYAEF  60
   61 VVLFVMLVPS RDYAYSIING IVFNLLAFLA LASHCRAMLT DPGAVPKGNA TKEFIESLQL 120
  121 KPGQVVYKCP KCCSIKPDRA HHCSVCKRCI RKMDHHCPWV NNCVGEN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.984
Match:	2fug9
Description:	Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein binding	0.646210551989356	bayes_pls_golite062009
binding	0.50942388426238	bayes_pls_golite062009
catalytic activity	0.481338897251745	bayes_pls_golite062009
transporter activity	0.0378208694761962	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [168-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQKYFVLFTM YIALISLHAL IMVGFHFLHC FEEDWTKCSS FSPPTTVILL ILLCFEALLF  60
   61 LIFTSVMFGT QVHSICTDET GIEQLKKEER RWAKKTKWMN MKAVFGHPFS LGWASPFATP 120
  121 DQGKADPYQY VV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: