YRC Public Data Repository - Protein Structure Prediction

Protein:	TR143_MOUSE
Organism:	Mus musculus
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TR143_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114678742 - gi\|114678742\|ref\|XP_001162685.1\| PREDICTED: similar to V1R-like receptor 2 [Pan troglodytes]	230.0	[0..14]	[283..170]
gi\|94379950 - gi\|94379950\|ref\|XP_890641.2\| PREDICTED: similar to vomeronasal 1 receptor, D14 [Mus musculus]	224.0	[0..3]	[284..41]
gi\|32493192 - gi\|32493192\|gb\|AAP85621.1\| pheromone receptor [Homo sapiens]	220.0	[0..2]	[288..1]

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Predicted Domain #1

Region A:
Residues: [1-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSTPTLIFI IIFYLVSLAS MLQNGFMMIV LGREWMRNRT LPAADMIVAS LASSRFCLHG  60
   61 IAILANLLAS FDFCYQANLI GILWDFTNTL IFWLTAWLAI FYCVKISSFS HPVLFWLKWR 120
  121 ISQLVPRLLV VSLIIGGLSA VISATGNFMA NQMTISQGFH GNCTFGHMSL DFYRYYYLYH 180
  181 SVLMWFTPFF LFLVSVIVLM FSLYQHVEKM RGHRPGPWDL HTQAHTMALK SLTFFFIFYI 240
  241 FFFLALVISS TKRKSMQSYY WAREAIIYTG IFLNSIILLF SNPKLRKALK MRF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.83
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits