YRC Public Data Repository - Protein Structure Prediction

Protein:	PRLD1_MOUSE
Organism:	Mus musculus
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRLD1_MOUSE.

Description	E-value	Query Range	Subject Range
PRLD1_CHICK - PRELI domain-containing protein 1, mitochondrial OS=Gallus gallus GN=PRELID1 PE=2 SV=1	317.0	[0..1]	[213..1]
gi\|74219629 - gi\|74219629\|dbj\|BAE29582.1\| unnamed protein product [Mus musculus]	314.0	[0..1]	[217..1]
gi\|62859183, gi\|... - gi\|89268217\|emb\|CAJ83452.1\| px19-like protein [Xenopus tropicalis], gi\|62859183\|ref\|NP_001016173.1\| ...	308.0	[0..1]	[214..1]
gi\|57526905, gi\|... - gi\|57526905\|ref\|NP_001009636.1\| Preli [Rattus norvegicus], gi\|56789203\|gb\|AAH88284.1\| PRELI domain c...	303.0	[0..1]	[217..1]
gi\|27924260, gi\|... - gi\|27924260\|gb\|AAH44981.1\| Px19-prov protein [Xenopus laevis], gi\|147905742\|ref\|NP_001080406.1\| px19...	303.0	[0..1]	[214..1]
gi\|109079906, gi... - gi\|109079908\|ref\|XP_001088735.1\| PREDICTED: px19-like protein isoform 4 [Macaca mulatta], gi\|1090799... ENSPTRT00000032492 - null	302.0	[0..1]	[211..1]
gi\|73953256 - gi\|73953256\|ref\|XP_852403.1\| PREDICTED: similar to Px19-like protein (25 kDa protein of relevant evo...	301.0	[0..1]	[210..1]
gi\|6456753 - gi\|6456753\|gb\|AAF09255.1\|AF201925_1 PRELI [Homo sapiens]	301.0	[0..1]	[211..1]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKYFLGQSV LRSSWDQVFA AFWQRYPNPY SKHVLTEDIV HREVTPDQKL LSRRLLTKTN  60
   61 RMPRWAERLF PANVAHSVYI LEDSIVDPQN QTMTTFTWNI NHARLMVVEE RCVYCVNSDN 120
  121 SGWTEIRREA WVSSSLFGVS RAVQEFGLAR FKSNVTKTMK GFEYILAKLQ GEAPSKTLVE 180
  181 TAKEAKEKAK ETALAATEKA KDLANKAATK QQQRQLV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	84.229148
Match:	PF04707.5
Description:	No description for PF04707.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits