YRC Public Data Repository - Protein Structure Prediction

Protein:	AKIR1_MOUSE
Organism:	Mus musculus
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AKIR1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|72004267, gi\|... - gi\|72004267\|ref\|NP_001025225.1\| akirin 1 [Rattus norvegicus], ref\|XP_342909.1\| similar to hypothetic...	309.0	[0..1]	[191..1]
gi\|76614437, gi\|... - gi\|76614437\|ref\|XP_885330.1\| PREDICTED: hypothetical protein isoform 3 [Bos taurus], gi\|76614433\|ref...	307.0	[0..1]	[191..1]
gi\|55586858 - gi\|55586858\|ref\|XP_513337.1\| PREDICTED: similar to Chromosome 1 open reading frame 108 isoform 4 [Pa... AKIRIN1 - akirin 1	298.0	[0..1]	[191..1]
gi\|73976821 - gi\|73976821\|ref\|XP_849177.1\| PREDICTED: similar to CG8580-PA, isoform A isoform 2 [Canis familiaris]	291.0	[0..1]	[191..1]
gi\|7670452 - gi\|7670452\|dbj\|BAA95077.1\| unnamed protein product [Mus musculus]	288.0	[0..11]	[191..1]
gi\|114555652 - gi\|114555652\|ref\|XP_001170485.1\| PREDICTED: similar to Chromosome 1 open reading frame 108 isoform 2...	270.0	[0..1]	[191..1]
gi\|45360463, gi\|... - gi\|89272789\|emb\|CAJ82302.1\| novel protein [Xenopus tropicalis], gi\|45360463\|ref\|NP_988914.1\| akirin ...	267.0	[0..1]	[191..1]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACGATLKRP MEFEAALLSP GSPKRRRCAP LPGPTPGLRP PDAEPPPLQM QTPPASLQQP  60
   61 APPGSERRLP TPEQIFQNIK QEYNRYQRWR HLEVVLSQSE ACTSETQPSS SALTAPGSPG 120
  121 AFWMKKDQPT FTLRQVGIIC ERLLKDYEDK VREEYEQILS TKLAEQYESF VKFTHDQIMR 180
  181 RYGTRPTSYV S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits