YRC Public Data Repository - Protein Structure Prediction

Protein:	SGMR1_MOUSE
Organism:	Mus musculus
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SGMR1_MOUSE.

Description	E-value	Query Range	Subject Range
SGMR1_RAT - Sigma non-opioid intracellular receptor 1 OS=Rattus norvegicus GN=Sigmar1 PE=1 SV=1	347.0	[0..1]	[222..1]
SGMR1_TRIVU - Sigma non-opioid intracellular receptor 1 OS=Trichosurus vulpecula GN=SIGMAR1 PE=2 SV=1	346.0	[0..1]	[223..1]
SGMR1_CAVPO - Sigma non-opioid intracellular receptor 1 OS=Cavia porcellus GN=SIGMAR1 PE=1 SV=1	340.0	[0..1]	[222..1]
gi\|123999092, gi... - gi\|123999092\|gb\|ABM87129.1\| opioid receptor, sigma 1 [synthetic construct], gi\|123987475\|gb\|ABM83807... OPRS1 - opioid receptor, sigma 1 HGNC:8157\|MIM:60... - non-opioid intracellular receptor 1 gi\|109111152 - gi\|109111152\|ref\|XP_001096077.1\| PREDICTED: similar to opioid receptor, sigma 1 isoform 1 isoform 5 ... gi\|55633137, gi\|... - gi\|55633137\|ref\|XP_520547.1\| PREDICTED: opioid receptor, sigma 1 isoform 7 [Pan troglodytes], gi\|114...	327.0	[0..1]	[222..1]
SGMR1_MUSER - Sigma non-opioid intracellular receptor 1 OS=Mustela erminea GN=SIGMAR1 PE=2 SV=1	324.0	[0..1]	[223..1]
SGMR1_BOVIN - Sigma non-opioid intracellular receptor 1 OS=Bos taurus GN=SIGMAR1 PE=2 SV=1	317.0	[0..1]	[223..1]
gi\|73971191 - gi\|73971191\|ref\|XP_852544.1\| PREDICTED: similar to opioid receptor, sigma 1 isoform 1 isoform 2 [Can...	316.0	[0..1]	[222..1]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPWAAGRRWA WITLILTIIA VLIQAAWLWL GTQNFVFSRE EIAQLARQYA GLDHELAFSR  60
   61 LIVELRRLHP GHVLPDEE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [79-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQWVFVNAGG WMGAMCILHA SLSEYVLLFG TALGSHGHSG RYWAEISDTI ISGTFHQWKE  60
   61 GTTKSEVFYP GETVVHGPGE ATALEWGPNT WMVEYGRGVI PSTLFFALAD TFFSTQDYLT 120
  121 LFYTLRAYAR GLRLELTTYL FGQDS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits