YRC Public Data Repository - Protein Structure Prediction

Protein:	ASPX_MOUSE
Organism:	Mus musculus
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ASPX_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114641111 - gi\|114641111\|ref\|XP_001147807.1\| PREDICTED: acrosomal vesicle protein 1 isoform 8 [Pan troglodytes]	180.0	[0..2]	[261..3]
ASPX_MOUSE - Acrosomal protein SP-10 OS=Mus musculus GN=Acrv1 PE=1 SV=2	172.0	[0..1]	[261..1]
gi\|298489, gi\|21... - gi\|298489\|gb\|AAB25693.1\| SP-10 [Papio hamadryas], gi\|2134583\|pir\|\|I57999 SP-10 - western baboon	170.0	[0..13]	[261..14]
gi\|73954517 - gi\|73954517\|ref\|XP_857843.1\| PREDICTED: similar to acrosomal vesicle protein 1 isoform b precursor i...	165.0	[0..1]	[261..1]
gi\|109109173 - gi\|109109173\|ref\|XP_001111710.1\| PREDICTED: similar to Acrosomal protein SP-10 precursor (Acrosomal ...	164.0	[0..13]	[261..14]
gi\|86741, gi\|104... - gi\|9955927\|ref\|NP_064454.1\| acrosomal vesicle protein 1 isoform b precursor [Homo sapiens], pir\|\|B37...	158.0	[0..13]	[261..14]
gi\|5305193, gi\|1... - gi\|5305193\|emb\|CAB46086.1\| sperm protein 10 [Rattus norvegicus], gi\|149028702\|gb\|EDL84043.1\| acrosom...	156.0	[0..1]	[260..1]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKELILLGLY LLGSAQGAPP GQPEELLDSV DQQASVQQLS SEYLSLANPS DAEALYETPL  60
   61 DEKTLSGHSS SEQESSEHAV AEHSAGEHSS GEQSSEHMSG DHMSGEHLSE HTSEEHSSGE 120
  121 HTSTEHTSGE QPATEQSSSD QPSEASSGEV SGDEAGEQVS SETNDKENDA M

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.43
Match:	2j63A
Description:	No description for 2j63A was found.

Predicted Domain #2

Region A:
Residues: [172-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STPLPSTSAA ITLNCHTCAY MNDDAKCLRG EGVCTTQNSQ QCMLKKIFEG GKLQFMVQGC  60
   61 ENMCPSMNLF SHGTRMQIMC CRNEPLCNKV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.19
Match:	1rewC
Description:	Structural refinement of the complex of bone morphogenetic protein 2 and its type IA receptor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.603451326978983	bayes_pls_golite062009
protein binding	0.0406255481464208	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: